Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LCU_RS01875 Genome accession   NZ_CP026116
Coordinates   341156..343270 (+) Length   704 a.a.
NCBI ID   WP_235805391.1    Uniprot ID   -
Organism   Latilactobacillus curvatus JCM 1096 = DSM 20019     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336156..348270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCU_RS01840 (LCU_01845) - 336208..337296 (+) 1089 WP_004270757.1 CAP-associated domain-containing protein -
  LCU_RS01845 (LCU_01850) - 337316..337606 (+) 291 WP_004270748.1 YlbG family protein -
  LCU_RS01850 (LCU_01855) rsmD 337612..338166 (+) 555 WP_004270750.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LCU_RS01855 (LCU_01860) coaD 338178..338672 (+) 495 WP_004270756.1 pantetheine-phosphate adenylyltransferase -
  LCU_RS01860 (LCU_01865) - 338674..339720 (+) 1047 WP_080563410.1 SepM family pheromone-processing serine protease -
  LCU_RS01865 (LCU_01870) comEA 339797..340468 (+) 672 WP_056966017.1 helix-hairpin-helix domain-containing protein Machinery gene
  LCU_RS01870 (LCU_01875) - 340527..341015 (+) 489 WP_111447701.1 ComE operon protein 2 -
  LCU_RS01875 (LCU_01880) comEC 341156..343270 (+) 2115 WP_235805391.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LCU_RS01880 (LCU_01885) holA 343271..344299 (+) 1029 WP_004270758.1 DNA polymerase III subunit delta -
  LCU_RS01885 (LCU_01890) rpsT 344354..344608 (-) 255 WP_004271117.1 30S ribosomal protein S20 -
  LCU_RS01890 (LCU_01895) rpsO 344885..345154 (+) 270 WP_004271112.1 30S ribosomal protein S15 -
  LCU_RS01895 (LCU_01900) - 345357..347075 (+) 1719 WP_056966011.1 ribonuclease J -
  LCU_RS01900 (LCU_01905) - 347158..348102 (+) 945 WP_056966010.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 79788.15 Da        Isoelectric Point: 9.3226

>NTDB_id=267237 LCU_RS01875 WP_235805391.1 341156..343270(+) (comEC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
MVSGLVLCLGGCHFWLARRTYEQPVRPNNQVYKIQPDTIKVAGDQIQLMAQGQNDDQRVVCYYRCQSSAEKRRWQTTNQP
LLLAGDIELERIQGATNRNEFDYARFMGQQKHCFYQANIIDGTVFRRIPPQGWLDWFHQRRQQGLIYLRQLPPALSFHAE
ALLCGVRESDGLAYQNVLGQLGIIHLLSLSGLHVFYFVTIIRRLATLCRVPREWVNVSLFCLLPLYALFVGGGTSITRAI
GLILLRLICEVSHFQQSRLDSWSWVLLVNLLWQPYLLISMGGLLSYLMAFGLIYQRRHGTFTTAFWLGLLSLPVCLRFNY
RWHILTILINGIVAPIFLPVMLGLIMVAICLWPVSHMIVWLEEGLLTTLYKGLAWIATFPYATITFGKIQLIPLFLIVIG
TLWLMASTGRRAKWGWGAVISLYVISFIGIHFNPVGRVIMFDIGQGDSLLIQQPFNRHNLLIDTGGRLALPQEKWQRRQI
VSRAEKVTVNYLYSCGIDHLEAIALSHQDADHIGDLNEIMQHIRVKRLICAAGLPQNRQFQRQVRPHLTKVAIEPYLADQ
HFMIGHQQINVLAPVVAGPGGNADSLVLQTQIGGASWLFTGDLEKAGEVAIVDRYPQLRVDYLKVGHHGSQTASDPQSIA
TWQVKGALISAGRHNRYGHPHAATLQTLKRANVPFWNTADCGMLEWRYGFGQVPMIKTTLKDCD

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=267237 LCU_RS01875 WP_235805391.1 341156..343270(+) (comEC) [Latilactobacillus curvatus JCM 1096 = DSM 20019]
ATGGTCAGTGGACTGGTACTGTGTTTAGGCGGTTGCCATTTTTGGCTGGCACGGCGCACCTACGAACAGCCGGTTAGACC
AAATAATCAAGTATATAAGATTCAACCCGATACGATCAAAGTGGCTGGCGATCAGATTCAATTAATGGCGCAGGGGCAGA
ATGATGACCAACGTGTTGTTTGCTACTATCGCTGCCAGAGTTCAGCGGAAAAACGCCGTTGGCAAACGACGAATCAGCCG
TTATTATTAGCGGGTGATATTGAATTAGAGCGTATCCAAGGTGCTACTAACCGGAATGAGTTCGACTATGCGCGCTTTAT
GGGGCAGCAAAAGCATTGTTTTTATCAAGCAAATATAATTGACGGAACGGTCTTTAGACGCATTCCACCACAAGGTTGGC
TAGATTGGTTCCACCAACGGCGCCAACAGGGGCTGATTTATCTCCGACAATTGCCACCAGCGTTGAGTTTTCATGCAGAG
GCGTTGTTATGTGGTGTTCGAGAGTCAGATGGCCTGGCCTACCAGAATGTGTTAGGTCAATTGGGGATTATTCATTTATT
GAGTTTATCCGGATTGCATGTATTCTACTTTGTGACAATCATTCGTCGATTGGCAACGCTGTGTCGAGTCCCGCGTGAAT
GGGTGAATGTTAGCTTGTTTTGTTTGCTACCCCTTTATGCGTTGTTTGTGGGGGGAGGCACGAGTATTACACGCGCTATC
GGGCTGATCTTACTACGATTAATCTGCGAAGTAAGTCATTTTCAGCAATCGCGTTTAGATAGTTGGAGTTGGGTATTGCT
GGTCAATCTTTTATGGCAGCCGTATTTATTAATCAGTATGGGGGGATTGCTGAGCTATCTGATGGCTTTTGGATTGATTT
ATCAGCGGCGCCATGGTACTTTTACAACGGCATTTTGGCTAGGCTTGTTAAGTTTACCGGTGTGCTTGCGGTTTAATTAT
CGTTGGCATATCTTGACGATTTTGATTAATGGGATTGTCGCGCCGATTTTCTTACCAGTCATGTTGGGTTTGATTATGGT
AGCGATTTGCTTATGGCCTGTTAGTCATATGATAGTTTGGTTAGAAGAAGGCCTGCTAACGACGCTGTATAAAGGATTAG
CTTGGATTGCAACGTTCCCATATGCGACAATTACTTTCGGTAAAATCCAGCTAATACCACTCTTTTTAATTGTGATAGGC
ACACTATGGTTGATGGCAAGTACTGGTCGGCGAGCAAAGTGGGGCTGGGGGGCTGTTATCAGCCTGTATGTCATTAGTTT
TATTGGTATCCACTTTAATCCGGTTGGCCGCGTGATTATGTTTGATATCGGGCAAGGCGATAGCCTGTTGATTCAACAAC
CCTTCAATCGACATAACCTGTTAATTGACACCGGCGGCCGACTAGCTTTACCGCAAGAAAAGTGGCAACGGCGGCAAATT
GTGAGTCGGGCGGAAAAAGTAACAGTTAATTACCTCTACAGCTGTGGCATTGATCATTTAGAGGCAATCGCATTATCGCA
TCAGGATGCTGATCATATAGGGGACTTAAATGAAATTATGCAACATATCCGAGTTAAACGGTTGATTTGTGCTGCGGGCT
TACCGCAAAACCGGCAGTTTCAACGGCAAGTGCGGCCGCATCTTACAAAAGTTGCAATTGAGCCTTATTTGGCGGACCAA
CATTTTATGATTGGTCACCAACAAATCAATGTGTTAGCGCCAGTGGTGGCCGGACCAGGCGGGAATGCTGACTCACTCGT
TTTGCAAACGCAAATTGGTGGTGCGAGTTGGTTATTTACTGGTGATTTAGAAAAAGCGGGTGAAGTGGCAATCGTTGATC
GCTACCCACAATTACGCGTTGATTACCTAAAGGTGGGTCACCATGGCAGTCAAACGGCGAGTGATCCCCAGTCAATTGCG
ACGTGGCAGGTAAAAGGGGCGTTGATTTCTGCGGGACGCCATAATCGTTATGGTCATCCACATGCCGCAACGTTGCAGAC
TTTAAAACGTGCGAACGTCCCATTTTGGAATACGGCTGACTGTGGGATGCTGGAATGGCGCTATGGTTTTGGCCAAGTGC
CAATGATTAAAACAACACTAAAGGATTGTGACTAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(444-651)

Competence protein (Competence)

(173-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Latilactobacillus sakei subsp. sakei 23K

62.801

100

0.631

Multiple sequence alignment