Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C2U64_RS03155 Genome accession   NZ_CP026089
Coordinates   423651..424460 (+) Length   269 a.a.
NCBI ID   WP_002117088.1    Uniprot ID   A0A013UCU5
Organism   Acinetobacter pittii strain WCHAP005069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 418651..429460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS03120 (C2U64_03125) - 419209..419364 (-) 156 Protein_375 hypothetical protein -
  C2U64_RS03125 (C2U64_03130) rpoZ 419403..419681 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C2U64_RS03130 (C2U64_03135) gmk 419754..420383 (-) 630 WP_002116973.1 guanylate kinase -
  C2U64_RS03135 (C2U64_03140) ispH 420506..421456 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C2U64_RS03140 (C2U64_03145) fimU 421626..422099 (+) 474 WP_068525289.1 pilus assembly FimT family protein Machinery gene
  C2U64_RS03145 (C2U64_03150) pilV 422093..422653 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C2U64_RS03150 (C2U64_03155) pilW 422653..423654 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  C2U64_RS03155 (C2U64_03160) pilX 423651..424460 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C2U64_RS03160 (C2U64_03165) pilY1 424472..428326 (+) 3855 WP_002116849.1 PilC/PilY family type IV pilus protein Machinery gene
  C2U64_RS03165 (C2U64_03170) pilY2 428337..428819 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  C2U64_RS03170 (C2U64_03175) pilE 428816..429241 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28518.31 Da        Isoelectric Point: 7.2645

>NTDB_id=267007 C2U64_RS03155 WP_002117088.1 423651..424460(+) (pilX) [Acinetobacter pittii strain WCHAP005069]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=267007 C2U64_RS03155 WP_002117088.1 423651..424460(+) (pilX) [Acinetobacter pittii strain WCHAP005069]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGGGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTGAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTGAAAGAGCACGAAAGTAATCCCGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTTGTCGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGTGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAATACCTCTGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTGAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A013UCU5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment