Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   C2U64_RS03140 Genome accession   NZ_CP026089
Coordinates   421626..422099 (+) Length   157 a.a.
NCBI ID   WP_068525289.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416626..427099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS03115 (C2U64_03120) spoT 417088..419193 (-) 2106 WP_002116807.1 RelA/SpoT family protein -
  C2U64_RS03120 (C2U64_03125) - 419209..419364 (-) 156 Protein_375 hypothetical protein -
  C2U64_RS03125 (C2U64_03130) rpoZ 419403..419681 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C2U64_RS03130 (C2U64_03135) gmk 419754..420383 (-) 630 WP_002116973.1 guanylate kinase -
  C2U64_RS03135 (C2U64_03140) ispH 420506..421456 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C2U64_RS03140 (C2U64_03145) fimU 421626..422099 (+) 474 WP_068525289.1 pilus assembly FimT family protein Machinery gene
  C2U64_RS03145 (C2U64_03150) pilV 422093..422653 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C2U64_RS03150 (C2U64_03155) pilW 422653..423654 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  C2U64_RS03155 (C2U64_03160) pilX 423651..424460 (+) 810 WP_002117088.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16951.64 Da        Isoelectric Point: 7.7951

>NTDB_id=267004 C2U64_RS03140 WP_068525289.1 421626..422099(+) (fimU) [Acinetobacter pittii strain WCHAP005069]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKNQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSALTATTLTFNANGVITNITQDTLLSICNSRINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=267004 C2U64_RS03140 WP_068525289.1 421626..422099(+) (fimU) [Acinetobacter pittii strain WCHAP005069]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAACCAAGCCATACTTGGTCGACAAGATGTATCCATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTGCATTAAC
AGCAACGACTCTAACTTTTAATGCGAATGGGGTGATAACCAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
GAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

87.898

100

0.879

Multiple sequence alignment