Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C2U64_RS03020 Genome accession   NZ_CP026089
Coordinates   395530..396282 (+) Length   250 a.a.
NCBI ID   WP_002116684.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WCHAP005069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 390530..401282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U64_RS03005 (C2U64_03010) ponA 391112..393673 (-) 2562 WP_148251477.1 penicillin-binding protein PBP1a -
  C2U64_RS03010 (C2U64_03015) pilM 393834..394892 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  C2U64_RS03015 (C2U64_03020) pilN 394892..395533 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  C2U64_RS03020 (C2U64_03025) pilO 395530..396282 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  C2U64_RS03025 (C2U64_03030) pilP 396293..396820 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  C2U64_RS03030 (C2U64_03035) pilQ 396883..399048 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  C2U64_RS03035 (C2U64_03040) aroK 399060..399629 (+) 570 WP_002116987.1 shikimate kinase AroK -
  C2U64_RS03040 (C2U64_03045) aroB 399658..400740 (+) 1083 WP_002116776.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28201.04 Da        Isoelectric Point: 4.8782

>NTDB_id=267000 C2U64_RS03020 WP_002116684.1 395530..396282(+) (pilO) [Acinetobacter pittii strain WCHAP005069]
MSPDELHELSLEQAASKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDGKSDIPVLNYSIKAKTYRYMGAVENPEHQEKNASASSVAP
DSSTANTQPK

Nucleotide


Download         Length: 753 bp        

>NTDB_id=267000 C2U64_RS03020 WP_002116684.1 395530..396282(+) (pilO) [Acinetobacter pittii strain WCHAP005069]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAGCAAGCTGCATCTAAGAAAAAAAAGATCACCTTGGAAAAATTTCT
TCAGCAATTTAACACGCTCGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGTTGGATTTTTATTT
TCTTTGCCGTATTGGCTTTGGGGTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCACAAGAA
AGTAATTTATTAAATGAGTTTCGAGAAAAAGACTCAAAATTACGCAACTTGCAGCAATACCAGCTTCAGCTTCAAGAGAT
GCAAGCCAACTTCAATCAGCAGTTAGAACAATTGCCAAAAGAAACCGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAACAGCCT
ATTACTATCGAAGCAACTGGGGATTATCACGCTTTCGGTGCTTTTGTTAGCAGTATTGCGGCATTACCACGTATTGTGAC
AATGCATGATTTTGTTGTTGAAGCTGCTCCTGTTAAGGATGGTAAATCAGATATTCCTGTGCTTAATTATTCTATTAAAG
CAAAAACTTATCGCTATATGGGTGCTGTAGAAAATCCTGAACATCAGGAAAAAAATGCTTCGGCTTCCTCGGTAGCACCT
GATTCTTCTACTGCTAACACACAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

83.6

100

0.836
  comO Acinetobacter baylyi ADP1

70

96

0.672

Multiple sequence alignment