Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AXA56_RS06805 Genome accession   NZ_CP031609
Coordinates   1421840..1422472 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain N3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1416840..1427472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXA56_RS06780 (AXA56_06780) yhfG 1416973..1417140 (+) 168 WP_000736860.1 YhfG family protein -
  AXA56_RS06785 (AXA56_06785) fic 1417130..1417732 (+) 603 WP_001280645.1 putative adenosine monophosphate-protein transferase Fic -
  AXA56_RS06790 (AXA56_06790) pabA 1417764..1418327 (+) 564 WP_042002851.1 aminodeoxychorismate synthase component 2 -
  AXA56_RS06795 (AXA56_06795) argD 1418413..1419636 (+) 1224 WP_042002852.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AXA56_RS06800 (AXA56_06800) yhfK 1419699..1421789 (-) 2091 WP_042002853.1 YccS/YhfK family putative transporter -
  AXA56_RS06805 (AXA56_06805) crp 1421840..1422472 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AXA56_RS06815 (AXA56_06815) yhfA 1422774..1423178 (+) 405 WP_001148908.1 OsmC family protein -
  AXA56_RS06820 (AXA56_06820) prkB 1423233..1424102 (-) 870 WP_116836257.1 phosphoribulokinase -
  AXA56_RS06825 (AXA56_06825) yheU 1424156..1424374 (-) 219 WP_000907085.1 YheU family protein -
  AXA56_RS06830 (AXA56_06830) yheT 1424368..1425390 (-) 1023 WP_116836258.1 hydrolase -
  AXA56_RS06835 (AXA56_06835) yheS 1425390..1427303 (-) 1914 WP_000634793.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=266445 AXA56_RS06805 WP_000242755.1 1421840..1422472(-) (crp) [Escherichia coli strain N3]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=266445 AXA56_RS06805 WP_000242755.1 1421840..1422472(-) (crp) [Escherichia coli strain N3]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGCCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment