Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DXX82_RS00200 Genome accession   NZ_CP031477
Coordinates   41083..43119 (-) Length   678 a.a.
NCBI ID   WP_115910799.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36083..48119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS00185 - 37105..38022 (-) 918 WP_205411138.1 lysine exporter LysO family protein -
  DXX82_RS00190 aroG 38146..39237 (-) 1092 WP_070867785.1 3-deoxy-7-phosphoheptulonate synthase AroG -
  DXX82_RS00195 - 39654..41045 (+) 1392 WP_049370787.1 DegQ family serine endoprotease -
  DXX82_RS00200 uvrB 41083..43119 (-) 2037 WP_115910799.1 excinuclease ABC subunit UvrB Machinery gene
  DXX82_RS00210 - 43727..44500 (-) 774 WP_005696285.1 TIGR01619 family protein -
  DXX82_RS00215 xthA 44510..45313 (-) 804 WP_065286094.1 exodeoxyribonuclease III -
  DXX82_RS00220 - 45546..46856 (+) 1311 WP_049366994.1 sodium:proton antiporter -
  DXX82_RS00225 - 46867..47544 (-) 678 WP_115910801.1 TIGR01621 family pseudouridine synthase -

Sequence

Protein


Download         Length: 678 a.a.        Molecular weight: 77384.93 Da        Isoelectric Point: 5.0926

>NTDB_id=265923 DXX82_RS00200 WP_115910799.1 41083..43119(-) (uvrB) [Haemophilus parainfluenzae strain M27794]
MAEKINTKPFILHSDFKPSGDQPQAIEKLVENLENGLAHQTLLGVTGSGKTFTIANVIATLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDRAVRIELFDNEIERLSLFDPLTGTSF
GAVPRFTVYPKTHYVTPRERILDAIEKIKAELVQRREYFIKEHKLLEEQRITQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGSEIVDQVVRPTGLLDPQIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQMKYNEEHGIVPQALNKKVGELLDIGQGANQKAKSKQRGKTAAEQTALYNAPKSAKEFQQQ
IKKLEQQMYKFAQDLEFEKAAAVRDQLHQLREQFMISE

Nucleotide


Download         Length: 2037 bp        

>NTDB_id=265923 DXX82_RS00200 WP_115910799.1 41083..43119(-) (uvrB) [Haemophilus parainfluenzae strain M27794]
ATGGCAGAGAAAATTAATACTAAGCCTTTTATTCTTCATTCCGATTTTAAACCTTCCGGTGATCAACCCCAAGCAATCGA
AAAATTAGTCGAAAATTTAGAGAATGGTTTGGCGCATCAAACCCTTCTCGGGGTAACAGGATCAGGTAAAACCTTTACCA
TTGCAAATGTTATCGCGACGTTAAATCGCCCAGCAATGTTACTTGCCCCAAATAAAACCCTTGCTGCTCAGCTTTATGCA
GAAATGAAAGCATTCTTTCCTGAAAACGCGGTGGAGTATTTCGTCTCATACTATGATTACTATCAGCCGGAAGCTTATGT
ACCGAGTAGTGATACCTTTATTGAGAAAGATGCTTCCATTAATGATCAAATTGAACAGATGCGTCTTTCAGCTACCAAGT
CGTTCTTAGAGCGTCGAGATACTATCGTAGTCGCATCTGTTTCGGCGATTTATGGCTTGGGAGACCCTGATAGCTATTTG
CAAATGATGTTGCATTTACAACAAGGGGCAATTATCGATCAACGTCAGATTTTAGCGAAGTTAGCAGAATTACAATATAC
AAGAAATGATCAAGCTTTTCAGCGTGGTACATTCCGTGTGCGCGGCGAAGTGATTGATATTTTCCCTGCAGAATCTGACG
ATCGTGCGGTACGAATTGAATTATTTGATAATGAAATTGAACGCTTAAGTTTATTTGATCCTTTAACGGGCACAAGTTTT
GGCGCGGTTCCGCGTTTTACGGTGTATCCGAAAACCCACTATGTAACACCAAGAGAACGTATTTTAGATGCCATTGAAAA
AATCAAAGCGGAGCTTGTGCAACGCCGTGAGTATTTCATCAAAGAGCATAAATTGTTGGAAGAGCAGCGTATTACCCAAC
GTACACAATTTGATATTGAGATGATGAATGAGCTCGGTTATTGCTCTGGAATCGAAAACTATTCACGCTATCTTTCTGGT
CGAAATGAAGGCGAACCGCCTCCGACATTGTTTGATTATATGCCGTCTGATGCGATTTTGATTATTGATGAATCACATGT
GACTGTACCGCAAATTGGTGGGATGTATCGTGGTGACCGCTCTCGTAAAGAAACGTTGGTGGAATATGGTTTCCGTTTGC
CTTCTGCATTGGATAACCGTCCTTTACGTTTTGAAGAGTTTGAGCGTTTAGCGCCACAAACTATTTATGTTTCAGCGACA
CCAGGCCCTTATGAATTAGAAAAATCGGGCAGTGAAATAGTCGATCAGGTAGTACGTCCAACAGGCTTACTTGATCCGCA
AATTGAAATTCGTCCAGTGTCCATTCAAGTGGATGATTTGCTATCTGAAGCGCGTCAAAGAGCGGATAAAAATGAGCGCG
TTTTAGTCACCACGCTAACGAAGAAAATGGCAGAAGATTTAACGGATTATTTAGACGAACATGGAATTCGTGTACGTTAT
TTGCATTCTGATATTGATACCGTTGAGCGTGTAGAGATTATTCGTGATTTACGTTTAGGCGAATTTGATGTATTGGTTGG
TATCAACTTGTTACGTGAGGGCTTGGATATTCCAGAAGTTTCTCTTGTGGCGATTTTAGATGCAGATAAAGAAGGTTTCT
TGCGTTCTGAACGTTCCTTAATCCAAACCATCGGTCGAGCTGCTCGAAACTTAAATGGTAAAGCAATTTTGTATGCTGAT
AGTATTACTAAATCTATGGAAAAAGCCATTACCGAGACGAATCGCCGTCGTGAAAAACAAATGAAATACAATGAAGAGCA
CGGCATTGTTCCACAGGCATTGAACAAGAAAGTGGGTGAGTTGTTAGATATTGGCCAAGGTGCAAATCAAAAAGCCAAAT
CGAAACAGCGTGGTAAAACGGCGGCTGAACAGACCGCACTTTACAATGCACCTAAATCCGCGAAAGAATTCCAACAACAA
ATTAAGAAATTAGAACAACAAATGTATAAATTTGCTCAAGATCTCGAATTTGAAAAAGCCGCGGCAGTGCGCGATCAGCT
TCATCAATTGAGAGAGCAGTTTATGATATCGGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(17-102)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(639-673)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.824

98.968

0.572
  uvrB Streptococcus pneumoniae R6

57.824

98.968

0.572
  uvrB Streptococcus pneumoniae D39

57.824

98.968

0.572

Multiple sequence alignment