Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C2I05_RS02180 Genome accession   NZ_CP026039
Coordinates   378642..378977 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain PK1_2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 373642..383977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I05_RS02160 (C2I05_02130) gcvT 374233..375321 (-) 1089 WP_038829737.1 glycine cleavage system aminomethyltransferase GcvT -
  C2I05_RS02165 (C2I05_02135) yqhH 375763..377436 (+) 1674 WP_120028360.1 SNF2-related protein -
  C2I05_RS02170 (C2I05_02140) yqhG 377457..378251 (+) 795 WP_032726154.1 YqhG family protein -
  C2I05_RS02175 (C2I05_02150) sinI 378435..378608 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  C2I05_RS02180 (C2I05_02155) sinR 378642..378977 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C2I05_RS02185 (C2I05_02160) tasA 379069..379854 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  C2I05_RS02190 (C2I05_02165) sipW 379919..380491 (-) 573 WP_003246088.1 signal peptidase I SipW -
  C2I05_RS02195 (C2I05_02170) tapA 380475..381236 (-) 762 WP_120028361.1 amyloid fiber anchoring/assembly protein TapA -
  C2I05_RS02200 (C2I05_02175) yqzG 381507..381833 (+) 327 WP_038829733.1 YqzG/YhdC family protein -
  C2I05_RS02205 (C2I05_02180) spoIIT 381875..382054 (-) 180 WP_003230176.1 YqzE family protein -
  C2I05_RS02210 (C2I05_02185) comGG 382126..382500 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  C2I05_RS02215 (C2I05_02190) comGF 382501..382884 (-) 384 WP_070547529.1 ComG operon protein ComGF Machinery gene
  C2I05_RS02220 (C2I05_02195) comGE 382910..383257 (-) 348 WP_070547530.1 ComG operon protein 5 Machinery gene
  C2I05_RS02225 (C2I05_02200) comGD 383241..383672 (-) 432 WP_120028362.1 comG operon protein ComGD Machinery gene
  C2I05_RS02230 (C2I05_02205) comGC 383662..383958 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=265821 C2I05_RS02180 WP_003226345.1 378642..378977(+) (sinR) [Bacillus subtilis strain PK1_2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=265821 C2I05_RS02180 WP_003226345.1 378642..378977(+) (sinR) [Bacillus subtilis strain PK1_2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment