Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | DLE02_RS16625 | Genome accession | NZ_CP031383 |
| Coordinates | 3472878..3473393 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain LUH 6011 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3467878..3478393
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLE02_RS16605 (DLE02_03283) | - | 3468197..3469657 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| DLE02_RS16610 (DLE02_03284) | - | 3469934..3471139 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| DLE02_RS16615 (DLE02_03285) | - | 3471158..3471301 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| DLE02_RS16620 (DLE02_03286) | omp38 | 3471426..3472496 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| DLE02_RS16625 (DLE02_03287) | fimT | 3472878..3473393 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| DLE02_RS16630 (DLE02_03288) | - | 3473502..3474677 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| DLE02_RS16635 (DLE02_03289) | - | 3474804..3475247 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| DLE02_RS16640 (DLE02_03290) | - | 3475290..3475643 (-) | 354 | WP_000457787.1 | multidrug efflux SMR transporter | - |
| DLE02_RS16645 (DLE02_03291) | - | 3475726..3476211 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| DLE02_RS16650 (DLE02_03292) | - | 3476204..3477847 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=265725 DLE02_RS16625 WP_000477147.1 3472878..3473393(+) (fimT) [Acinetobacter baumannii strain LUH 6011]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=265725 DLE02_RS16625 WP_000477147.1 3472878..3473393(+) (fimT) [Acinetobacter baumannii strain LUH 6011]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |