Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   C2H95_RS01225 Genome accession   NZ_CP026037
Coordinates   244346..244465 (+) Length   39 a.a.
NCBI ID   WP_085185514.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 239346..249465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS01205 (C2H95_01180) albG 239510..240211 (+) 702 WP_249849555.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  C2H95_RS01210 (C2H95_01185) ywhL 240217..241593 (-) 1377 WP_249849556.1 YncE family protein -
  C2H95_RS01215 (C2H95_01190) ywhK 241632..242987 (-) 1356 WP_249849557.1 YncE family protein -
  C2H95_RS21075 (C2H95_01195) - 242984..243214 (-) 231 WP_072175635.1 hypothetical protein -
  C2H95_RS01220 (C2H95_01200) rapF 243217..244362 (+) 1146 WP_038829812.1 response regulator aspartate phosphatase RapF Regulator
  C2H95_RS01225 (C2H95_01205) phrF 244346..244465 (+) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  C2H95_RS01230 (C2H95_01210) - 244563..244976 (+) 414 Protein_246 YbaK/EbsC family protein -
  C2H95_RS01235 (C2H95_01215) speB 245064..245936 (-) 873 WP_003227545.1 agmatinase -
  C2H95_RS01240 (C2H95_01220) speE 245997..246827 (-) 831 WP_249849558.1 spermidine synthase -
  C2H95_RS01245 (C2H95_01225) pbpG 247029..249104 (+) 2076 WP_124072632.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4259.20 Da        Isoelectric Point: 10.4997

>NTDB_id=265668 C2H95_RS01225 WP_085185514.1 244346..244465(+) (phrF) [Bacillus subtilis strain PK5_17]
MKLKSKLLLFCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=265668 C2H95_RS01225 WP_085185514.1 244346..244465(+) (phrF) [Bacillus subtilis strain PK5_17]
ATGAAATTGAAGTCTAAACTATTACTCTTTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment