Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C2H95_RS00160 Genome accession   NZ_CP026037
Coordinates   28597..29286 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PK5_17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 23597..34286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS00125 (C2H95_00125) flgN 23778..24260 (-) 483 WP_003227999.1 flagellar protein FlgN -
  C2H95_RS00130 (C2H95_00130) flgM 24276..24542 (-) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H95_RS00135 (C2H95_00135) yvyF 24623..25042 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H95_RS00140 (C2H95_00140) comFC 25115..25837 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H95_RS00145 (C2H95_00145) comFB 25801..26097 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H95_RS00150 (C2H95_00150) comFA 26157..27548 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  C2H95_RS00155 (C2H95_00155) fakBA 27654..28499 (-) 846 WP_085185615.1 DegV family protein -
  C2H95_RS00160 (C2H95_00160) degU 28597..29286 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H95_RS00165 (C2H95_00165) degS 29369..30526 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H95_RS00170 (C2H95_00170) yvyE 30743..31396 (+) 654 WP_003227979.1 YigZ family protein -
  C2H95_RS00175 (C2H95_00175) tagV 31396..32562 (+) 1167 WP_220396509.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C2H95_RS00180 (C2H95_00180) tagO 32635..33711 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=265662 C2H95_RS00160 WP_003219701.1 28597..29286(-) (degU) [Bacillus subtilis strain PK5_17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=265662 C2H95_RS00160 WP_003219701.1 28597..29286(-) (degU) [Bacillus subtilis strain PK5_17]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACAGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment