Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C2H95_RS00140 Genome accession   NZ_CP026037
Coordinates   25115..25837 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 20115..30837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS00105 (C2H95_00105) fliW 20255..20686 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  C2H95_RS00110 (C2H95_00110) yviE 20707..21282 (-) 576 WP_015384781.1 DUF6470 family protein -
  C2H95_RS00115 (C2H95_00115) flgL 21329..22225 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2H95_RS00120 (C2H95_00120) flgK 22236..23759 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C2H95_RS00125 (C2H95_00125) flgN 23778..24260 (-) 483 WP_003227999.1 flagellar protein FlgN -
  C2H95_RS00130 (C2H95_00130) flgM 24276..24542 (-) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H95_RS00135 (C2H95_00135) yvyF 24623..25042 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H95_RS00140 (C2H95_00140) comFC 25115..25837 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H95_RS00145 (C2H95_00145) comFB 25801..26097 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H95_RS00150 (C2H95_00150) comFA 26157..27548 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  C2H95_RS00155 (C2H95_00155) fakBA 27654..28499 (-) 846 WP_085185615.1 DegV family protein -
  C2H95_RS00160 (C2H95_00160) degU 28597..29286 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H95_RS00165 (C2H95_00165) degS 29369..30526 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=265660 C2H95_RS00140 WP_014481051.1 25115..25837(-) (comFC) [Bacillus subtilis strain PK5_17]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=265660 C2H95_RS00140 WP_014481051.1 25115..25837(-) (comFC) [Bacillus subtilis strain PK5_17]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment