Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C2H93_RS15895 Genome accession   NZ_CP026036
Coordinates   3114974..3115663 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PK5_16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109974..3120663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS15860 (C2H93_15875) flgN 3110155..3110637 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2H93_RS15865 (C2H93_15880) flgM 3110653..3110919 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H93_RS15870 (C2H93_15885) yvyF 3111000..3111419 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H93_RS15875 (C2H93_15890) comFC 3111492..3112214 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  C2H93_RS15880 (C2H93_15895) comFB 3112178..3112474 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H93_RS15885 (C2H93_15900) comFA 3112534..3113925 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  C2H93_RS15890 (C2H93_15905) fakBA 3114031..3114876 (-) 846 WP_003244125.1 DegV family protein -
  C2H93_RS15895 (C2H93_15910) degU 3114974..3115663 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H93_RS15900 (C2H93_15915) degS 3115746..3116903 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H93_RS15905 (C2H93_15920) yvyE 3117120..3117773 (+) 654 WP_064671520.1 YigZ family protein -
  C2H93_RS15910 (C2H93_15925) tagV 3117773..3118948 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C2H93_RS15915 (C2H93_15930) tagO 3119021..3120097 (-) 1077 WP_032726968.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=265645 C2H93_RS15895 WP_003219701.1 3114974..3115663(-) (degU) [Bacillus subtilis strain PK5_16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=265645 C2H93_RS15895 WP_003219701.1 3114974..3115663(-) (degU) [Bacillus subtilis strain PK5_16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCGGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment