Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C2H93_RS15875 Genome accession   NZ_CP026036
Coordinates   3111492..3112214 (-) Length   240 a.a.
NCBI ID   WP_032726962.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106492..3117214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS15840 (C2H93_15855) fliW 3106632..3107063 (-) 432 WP_032726959.1 flagellar assembly protein FliW -
  C2H93_RS15845 (C2H93_15860) yviE 3107084..3107659 (-) 576 WP_032726961.1 DUF6470 family protein -
  C2H93_RS15850 (C2H93_15865) flgL 3107706..3108602 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2H93_RS15855 (C2H93_15870) flgK 3108613..3110136 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C2H93_RS15860 (C2H93_15875) flgN 3110155..3110637 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2H93_RS15865 (C2H93_15880) flgM 3110653..3110919 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H93_RS15870 (C2H93_15885) yvyF 3111000..3111419 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H93_RS15875 (C2H93_15890) comFC 3111492..3112214 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  C2H93_RS15880 (C2H93_15895) comFB 3112178..3112474 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H93_RS15885 (C2H93_15900) comFA 3112534..3113925 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  C2H93_RS15890 (C2H93_15905) fakBA 3114031..3114876 (-) 846 WP_003244125.1 DegV family protein -
  C2H93_RS15895 (C2H93_15910) degU 3114974..3115663 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H93_RS15900 (C2H93_15915) degS 3115746..3116903 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27558.85 Da        Isoelectric Point: 9.3157

>NTDB_id=265643 C2H93_RS15875 WP_032726962.1 3111492..3112214(-) (comFC) [Bacillus subtilis strain PK5_16]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKICYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNHSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=265643 C2H93_RS15875 WP_032726962.1 3111492..3112214(-) (comFC) [Bacillus subtilis strain PK5_16]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGATTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATCATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment