Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C2H93_RS15885 Genome accession   NZ_CP026036
Coordinates   3112534..3113925 (-) Length   463 a.a.
NCBI ID   WP_249852325.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3107534..3118925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H93_RS15850 (C2H93_15865) flgL 3107706..3108602 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2H93_RS15855 (C2H93_15870) flgK 3108613..3110136 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C2H93_RS15860 (C2H93_15875) flgN 3110155..3110637 (-) 483 WP_014481048.1 flagellar protein FlgN -
  C2H93_RS15865 (C2H93_15880) flgM 3110653..3110919 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H93_RS15870 (C2H93_15885) yvyF 3111000..3111419 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H93_RS15875 (C2H93_15890) comFC 3111492..3112214 (-) 723 WP_032726962.1 comF operon protein ComFC Machinery gene
  C2H93_RS15880 (C2H93_15895) comFB 3112178..3112474 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H93_RS15885 (C2H93_15900) comFA 3112534..3113925 (-) 1392 WP_249852325.1 ATP-dependent helicase ComFA Machinery gene
  C2H93_RS15890 (C2H93_15905) fakBA 3114031..3114876 (-) 846 WP_003244125.1 DegV family protein -
  C2H93_RS15895 (C2H93_15910) degU 3114974..3115663 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H93_RS15900 (C2H93_15915) degS 3115746..3116903 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H93_RS15905 (C2H93_15920) yvyE 3117120..3117773 (+) 654 WP_064671520.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52425.53 Da        Isoelectric Point: 9.8809

>NTDB_id=265644 C2H93_RS15885 WP_249852325.1 3112534..3113925(-) (comFA) [Bacillus subtilis strain PK5_16]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENAPIWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDAIKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=265644 C2H93_RS15885 WP_249852325.1 3112534..3113925(-) (comFA) [Bacillus subtilis strain PK5_16]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGATATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGC
ACCAATCTGGAAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGTGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAATAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.84

100

0.978

Multiple sequence alignment