Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DK878_RS05895 Genome accession   NZ_CP031379
Coordinates   1187037..1188779 (-) Length   580 a.a.
NCBI ID   WP_053866167.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182037..1193779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS05870 (DK878_06080) - 1182641..1183183 (-) 543 WP_053866165.1 hypothetical protein -
  DK878_RS05875 (DK878_06085) - 1183203..1183673 (-) 471 WP_024385761.1 hypothetical protein -
  DK878_RS05880 (DK878_06090) - 1183804..1184604 (+) 801 WP_053866166.1 XRE family transcriptional regulator -
  DK878_RS05885 (DK878_06095) mutY 1185267..1186427 (-) 1161 WP_014637870.1 A/G-specific adenine glycosylase -
  DK878_RS05890 (DK878_06100) - 1186661..1187053 (-) 393 WP_029694070.1 PaaI family thioesterase -
  DK878_RS05895 (DK878_06105) rcrQ 1187037..1188779 (-) 1743 WP_053866167.1 ABC transporter ATP-binding protein Regulator
  DK878_RS05900 (DK878_06110) - 1188766..1190505 (-) 1740 WP_053866168.1 ABC transporter ATP-binding protein -
  DK878_RS05905 (DK878_06115) pta 1190507..1191481 (-) 975 WP_002935239.1 phosphate acetyltransferase -
  DK878_RS05910 (DK878_06120) - 1191499..1192392 (-) 894 WP_053866169.1 RluA family pseudouridine synthase -
  DK878_RS05915 (DK878_06125) - 1192392..1193210 (-) 819 WP_024378697.1 NAD kinase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 64517.70 Da        Isoelectric Point: 5.3428

>NTDB_id=265550 DK878_RS05895 WP_053866167.1 1187037..1188779(-) (rcrQ) [Streptococcus suis strain ISU2660]
MRQSSFKELVRLVLHQPLRMSLMLVGTLVQVLLTVYLPILIGQAVDAVLIANGQVLLGIIGKMVMVILLNTLVQWYLPLV
TNRLVYGMVADLREQVYVKLHQMPLSYLDRQSVGDLVARFSSDSEQLINGLLMIFNQFFIGILTIFLTIFTMARLDLMMM
LLVVALTPVSLLVARYIAKKSYGYYRQQTQARGRQSQLLDESISQLTLVQSFNAQEQFTQGFQVVNNQYATYSQQAIFAS
STVNPSTRFINAIIYALLAGLGALRIMAGNFTVGSLTTFLNYASQYSKPFNDISSVLSELQSALACADRLFAILALGSID
DQAEREIDSEELKGAISFDNVSFSYSPDRSLIEHLDIDVKAGQKVAIVGPTGAGKSTMINLLMRFYDVTAGQIVLDGVSI
SQYSREDLRRQIGMVLQETWIKSGTIHDNIAYGYPNATRELVIEAAKAANADFFIRQLPQGYDTVLADGGEGLSQGQRQL
LSIARVFVKIPKILILDEATSSIDTRTEILVQEAFAKLMEGRTSFIIAHRLSTIQSADLILVMVDGKIVEQGNHEALMAE
QGVYYQMQTSQQTEEDERVR

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=265550 DK878_RS05895 WP_053866167.1 1187037..1188779(-) (rcrQ) [Streptococcus suis strain ISU2660]
ATGAGACAATCTAGTTTTAAGGAACTGGTCAGATTGGTTTTACACCAGCCCCTTCGAATGTCCTTGATGTTGGTAGGAAC
TTTGGTGCAAGTCCTTCTGACAGTTTATCTGCCTATCTTGATTGGTCAGGCAGTCGATGCAGTATTGATAGCAAATGGTC
AGGTCTTGCTAGGGATAATTGGCAAAATGGTGATGGTTATCTTGCTTAATACGCTGGTGCAATGGTACTTACCTTTGGTA
ACCAATCGCTTGGTTTACGGAATGGTGGCCGACTTGCGTGAACAGGTTTATGTTAAGCTGCACCAGATGCCCCTATCTTA
TCTGGATCGTCAATCAGTCGGTGATTTGGTGGCTCGTTTTTCAAGTGATAGTGAGCAATTAATAAATGGTCTCTTGATGA
TTTTTAATCAATTTTTCATTGGTATCTTGACCATTTTCCTAACCATTTTCACTATGGCTAGGCTTGACTTGATGATGATG
TTGCTGGTTGTGGCATTGACTCCAGTTTCTCTGCTTGTGGCACGCTATATCGCTAAGAAATCCTATGGTTATTATAGGCA
ACAGACTCAGGCACGTGGGAGGCAATCTCAACTTTTGGATGAGTCCATCAGTCAACTGACCTTGGTTCAATCTTTCAATG
CTCAAGAGCAATTTACGCAAGGTTTTCAAGTTGTGAATAACCAGTATGCGACCTATTCCCAACAGGCTATCTTTGCCTCT
TCAACGGTCAATCCCAGTACGCGGTTTATCAATGCTATTATTTATGCCTTACTTGCAGGACTTGGAGCGCTGAGAATTAT
GGCAGGAAATTTTACAGTGGGATCCCTGACAACCTTCCTCAATTATGCTAGTCAGTACAGCAAGCCTTTTAATGATATTT
CCTCGGTCCTATCGGAATTGCAGAGCGCCTTAGCTTGTGCAGACAGGCTATTTGCTATCTTGGCTCTAGGTAGCATTGAC
GATCAGGCTGAGCGGGAAATTGATTCAGAGGAGTTGAAGGGAGCTATTTCCTTTGATAATGTGTCTTTCTCCTATAGTCC
TGACCGTTCTCTGATAGAACATTTGGACATTGATGTCAAGGCTGGACAAAAAGTAGCCATTGTTGGACCTACTGGTGCTG
GTAAATCAACCATGATTAACCTTCTTATGCGTTTCTATGACGTGACGGCTGGTCAGATTGTCTTAGATGGTGTTTCGATT
AGCCAGTACAGTCGTGAGGATCTCCGCAGACAGATTGGGATGGTTTTACAGGAGACATGGATCAAATCTGGTACCATTCA
TGATAATATTGCCTATGGCTATCCAAATGCCACGCGGGAATTGGTCATTGAGGCGGCTAAGGCAGCTAATGCAGACTTCT
TTATTCGTCAGCTTCCACAGGGTTACGATACGGTTTTGGCAGATGGAGGAGAAGGCTTATCCCAGGGACAACGTCAGCTT
TTGTCTATTGCGCGTGTCTTTGTCAAGATACCTAAAATCCTGATTTTAGATGAGGCGACTTCCTCTATTGATACACGGAC
AGAAATTTTAGTACAGGAAGCATTTGCCAAATTGATGGAAGGACGGACCAGTTTTATTATTGCTCATCGCCTATCAACCA
TTCAATCAGCTGACTTGATTTTGGTCATGGTGGACGGAAAAATTGTTGAACAAGGGAATCATGAAGCGTTGATGGCTGAA
CAAGGCGTTTATTATCAAATGCAAACAAGTCAGCAGACAGAGGAGGATGAACGTGTTAGATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(22-289)

ABC transporter (ABC_tran)

(354-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.624

97.759

0.378

Multiple sequence alignment