Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C2H96_RS14385 Genome accession   NZ_CP026035
Coordinates   2822313..2823704 (+) Length   463 a.a.
NCBI ID   WP_120027550.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2817313..2828704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS14365 (C2H96_14295) yvyE 2818465..2819118 (-) 654 WP_003227979.1 YigZ family protein -
  C2H96_RS14370 (C2H96_14300) degS 2819335..2820492 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H96_RS14375 (C2H96_14305) degU 2820575..2821264 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H96_RS14380 (C2H96_14310) fakBA 2821362..2822207 (+) 846 WP_038829896.1 DegV family protein -
  C2H96_RS14385 (C2H96_14315) comFA 2822313..2823704 (+) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  C2H96_RS14390 (C2H96_14320) comFB 2823764..2824060 (+) 297 WP_120027549.1 late competence protein ComFB -
  C2H96_RS14395 (C2H96_14325) comFC 2824024..2824746 (+) 723 WP_120027548.1 comF operon protein ComFC Machinery gene
  C2H96_RS14400 (C2H96_14330) yvyF 2824820..2825239 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H96_RS14405 (C2H96_14335) flgM 2825320..2825586 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H96_RS14410 (C2H96_14340) flgN 2825602..2826084 (+) 483 WP_014481048.1 flagellar protein FlgN -
  C2H96_RS14415 (C2H96_14345) flgK 2826103..2827626 (+) 1524 WP_120027547.1 flagellar hook-associated protein FlgK -
  C2H96_RS14420 (C2H96_14350) flgL 2827637..2828533 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52515.48 Da        Isoelectric Point: 9.7915

>NTDB_id=265550 C2H96_RS14385 WP_120027550.1 2822313..2823704(+) (comFA) [Bacillus subtilis strain PK5_68]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=265550 C2H96_RS14385 WP_120027550.1 2822313..2823704(+) (comFA) [Bacillus subtilis strain PK5_68]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGGGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCCGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983

Multiple sequence alignment