Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C2H96_RS14375 Genome accession   NZ_CP026035
Coordinates   2820575..2821264 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain PK5_68     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2815575..2826264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS14355 (C2H96_14285) tagO 2816141..2817217 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C2H96_RS14360 (C2H96_14290) tagV 2817290..2818465 (-) 1176 WP_120027551.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C2H96_RS14365 (C2H96_14295) yvyE 2818465..2819118 (-) 654 WP_003227979.1 YigZ family protein -
  C2H96_RS14370 (C2H96_14300) degS 2819335..2820492 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C2H96_RS14375 (C2H96_14305) degU 2820575..2821264 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H96_RS14380 (C2H96_14310) fakBA 2821362..2822207 (+) 846 WP_038829896.1 DegV family protein -
  C2H96_RS14385 (C2H96_14315) comFA 2822313..2823704 (+) 1392 WP_120027550.1 ATP-dependent helicase ComFA Machinery gene
  C2H96_RS14390 (C2H96_14320) comFB 2823764..2824060 (+) 297 WP_120027549.1 late competence protein ComFB -
  C2H96_RS14395 (C2H96_14325) comFC 2824024..2824746 (+) 723 WP_120027548.1 comF operon protein ComFC Machinery gene
  C2H96_RS14400 (C2H96_14330) yvyF 2824820..2825239 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H96_RS14405 (C2H96_14335) flgM 2825320..2825586 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H96_RS14410 (C2H96_14340) flgN 2825602..2826084 (+) 483 WP_014481048.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=265549 C2H96_RS14375 WP_003219701.1 2820575..2821264(+) (degU) [Bacillus subtilis strain PK5_68]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=265549 C2H96_RS14375 WP_003219701.1 2820575..2821264(+) (degU) [Bacillus subtilis strain PK5_68]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment