Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C2H96_RS02115 Genome accession   NZ_CP026035
Coordinates   469447..470697 (-) Length   416 a.a.
NCBI ID   WP_120028097.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_68     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 464447..475697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H96_RS02100 (C2H96_02035) rny 465047..466609 (-) 1563 WP_003221010.1 ribonuclease Y -
  C2H96_RS02105 (C2H96_02040) pbpX 466885..468060 (-) 1176 WP_032725712.1 serine hydrolase domain-containing protein -
  C2H96_RS02110 (C2H96_02045) recA 468228..469274 (-) 1047 WP_003245789.1 recombinase RecA Machinery gene
  C2H96_RS02115 (C2H96_02050) cinA 469447..470697 (-) 1251 WP_120028097.1 competence/damage-inducible protein A Machinery gene
  C2H96_RS02120 (C2H96_02055) pgsA 470715..471296 (-) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C2H96_RS02125 (C2H96_02060) rodZ 471346..472212 (-) 867 WP_014476837.1 cell shape determination protein RodZ -
  C2H96_RS02130 (C2H96_02065) - 472279..473070 (-) 792 WP_003220998.1 YmfK family protein -
  C2H96_RS02135 (C2H96_02070) ymfJ 473200..473457 (-) 258 WP_003245199.1 DUF3243 domain-containing protein -
  C2H96_RS02140 (C2H96_02075) efpI 473538..474266 (-) 729 WP_015483236.1 EF-P-5 aminopentanone reductase -
  C2H96_RS02145 (C2H96_02080) ymfH 474321..475607 (-) 1287 WP_249848234.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45478.87 Da        Isoelectric Point: 5.8577

>NTDB_id=265505 C2H96_RS02115 WP_120028097.1 469447..470697(-) (cinA) [Bacillus subtilis strain PK5_68]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNGEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKKTLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=265505 C2H96_RS02115 WP_120028097.1 469447..470697(-) (cinA) [Bacillus subtilis strain PK5_68]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGGTGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGTTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCACAGAGCATGAATCGCGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCGCAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGTTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGAAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.519

100

0.995
  cinA Streptococcus mitis NCTC 12261

45.933

100

0.462
  cinA Streptococcus mitis SK321

45.933

100

0.462
  cinA Streptococcus pneumoniae TIGR4

45.694

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.457
  cinA Streptococcus pneumoniae R6

45.455

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus pneumoniae D39

45.215

100

0.454
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment