Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DK878_RS00375 Genome accession   NZ_CP031379
Coordinates   65781..66371 (+) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60781..71371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS00365 (DK878_00370) - 62164..63687 (+) 1524 WP_004194221.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  DK878_RS00370 (DK878_00375) hexB 63805..65742 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  DK878_RS00375 (DK878_00380) ruvA 65781..66371 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  DK878_RS00380 (DK878_00385) - 66625..67194 (+) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  DK878_RS00385 (DK878_00390) cinA 67231..68412 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  DK878_RS00390 (DK878_00395) recA 68464..69615 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DK878_RS00395 (DK878_00400) spx 69852..70250 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DK878_RS00400 (DK878_00405) - 70350..70616 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DK878_RS00405 (DK878_00410) ruvX 70616..71035 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DK878_RS00410 (DK878_00415) - 71047..71367 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=265502 DK878_RS00375 WP_004194470.1 65781..66371(+) (ruvA) [Streptococcus suis strain ISU2660]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=265502 DK878_RS00375 WP_004194470.1 65781..66371(+) (ruvA) [Streptococcus suis strain ISU2660]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403

Multiple sequence alignment