Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   C2H94_RS08445 Genome accession   NZ_CP026034
Coordinates   1586005..1586124 (+) Length   39 a.a.
NCBI ID   WP_085185514.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 1581005..1591124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS08425 (C2H94_08360) albG 1581169..1581870 (+) 702 WP_249849555.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  C2H94_RS08430 (C2H94_08365) ywhL 1581876..1583252 (-) 1377 WP_249849556.1 YncE family protein -
  C2H94_RS08435 (C2H94_08370) ywhK 1583291..1584646 (-) 1356 WP_249849557.1 YncE family protein -
  C2H94_RS21145 (C2H94_08375) - 1584643..1584873 (-) 231 WP_072175635.1 hypothetical protein -
  C2H94_RS08440 (C2H94_08380) rapF 1584876..1586021 (+) 1146 WP_038829812.1 response regulator aspartate phosphatase RapF Regulator
  C2H94_RS08445 (C2H94_08385) phrF 1586005..1586124 (+) 120 WP_085185514.1 phosphatase RapF inhibitor PhrF Regulator
  C2H94_RS08450 (C2H94_08390) - 1586222..1586635 (+) 414 Protein_1660 YbaK/EbsC family protein -
  C2H94_RS08455 (C2H94_08395) speB 1586723..1587595 (-) 873 WP_003227545.1 agmatinase -
  C2H94_RS08460 (C2H94_08400) speE 1587656..1588486 (-) 831 WP_249849558.1 spermidine synthase -
  C2H94_RS08465 (C2H94_08405) pbpG 1588688..1590763 (+) 2076 WP_124072632.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4259.20 Da        Isoelectric Point: 10.4997

>NTDB_id=265462 C2H94_RS08445 WP_085185514.1 1586005..1586124(+) (phrF) [Bacillus subtilis strain PK5_52]
MKLKSKLLLFCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=265462 C2H94_RS08445 WP_085185514.1 1586005..1586124(+) (phrF) [Bacillus subtilis strain PK5_52]
ATGAAATTGAAGTCTAAACTATTACTCTTTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment