Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C2H94_RS07345 Genome accession   NZ_CP026034
Coordinates   1366780..1367502 (-) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1361780..1372502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS07310 (C2H94_07285) fliW 1361920..1362351 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  C2H94_RS07315 (C2H94_07290) yviE 1362372..1362947 (-) 576 WP_015384781.1 DUF6470 family protein -
  C2H94_RS07320 (C2H94_07295) flgL 1362994..1363890 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C2H94_RS07325 (C2H94_07300) flgK 1363901..1365424 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C2H94_RS07330 (C2H94_07305) flgN 1365443..1365925 (-) 483 WP_003227999.1 flagellar protein FlgN -
  C2H94_RS07335 (C2H94_07310) flgM 1365941..1366207 (-) 267 WP_161986330.1 flagellar biosynthesis anti-sigma factor FlgM -
  C2H94_RS07340 (C2H94_07315) yvyF 1366288..1366707 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C2H94_RS07345 (C2H94_07320) comFC 1366780..1367502 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  C2H94_RS07350 (C2H94_07325) comFB 1367466..1367762 (-) 297 WP_003227989.1 late competence protein ComFB -
  C2H94_RS07355 (C2H94_07330) comFA 1367822..1369213 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  C2H94_RS07360 (C2H94_07335) fakBA 1369319..1370164 (-) 846 WP_085185615.1 DegV family protein -
  C2H94_RS07365 (C2H94_07340) degU 1370262..1370951 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C2H94_RS07370 (C2H94_07345) degS 1371034..1372191 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=265454 C2H94_RS07345 WP_014481051.1 1366780..1367502(-) (comFC) [Bacillus subtilis strain PK5_52]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=265454 C2H94_RS07345 WP_014481051.1 1366780..1367502(-) (comFC) [Bacillus subtilis strain PK5_52]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992

Multiple sequence alignment