Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   C2H94_RS01725 Genome accession   NZ_CP026034
Coordinates   291441..291788 (-) Length   115 a.a.
NCBI ID   WP_063335293.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 286441..296788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS01680 (C2H94_01665) sinI 286966..287139 (+) 174 WP_014477323.1 anti-repressor SinI Regulator
  C2H94_RS01685 (C2H94_01670) sinR 287173..287508 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C2H94_RS01690 (C2H94_01675) tasA 287600..288385 (-) 786 WP_014477324.1 biofilm matrix protein TasA -
  C2H94_RS01695 (C2H94_01680) sipW 288450..289022 (-) 573 WP_003246088.1 signal peptidase I SipW -
  C2H94_RS01700 (C2H94_01685) tapA 289006..289767 (-) 762 WP_032726156.1 amyloid fiber anchoring/assembly protein TapA -
  C2H94_RS01705 (C2H94_01690) yqzG 290038..290364 (+) 327 WP_038829733.1 YqzG/YhdC family protein -
  C2H94_RS01710 (C2H94_01695) spoIIT 290406..290585 (-) 180 WP_014480252.1 YqzE family protein -
  C2H94_RS01715 (C2H94_01700) comGG 290657..291031 (-) 375 WP_032726157.1 ComG operon protein ComGG Machinery gene
  C2H94_RS01720 (C2H94_01705) comGF 291032..291415 (-) 384 WP_032726158.1 ComG operon protein ComGF Machinery gene
  C2H94_RS01725 (C2H94_01710) comGE 291441..291788 (-) 348 WP_063335293.1 ComG operon protein 5 Machinery gene
  C2H94_RS01730 (C2H94_01715) comGD 291772..292203 (-) 432 WP_032726159.1 competence type IV pilus minor pilin ComGD Machinery gene
  C2H94_RS01735 (C2H94_01720) comGC 292193..292489 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  C2H94_RS01740 (C2H94_01725) comGB 292503..293540 (-) 1038 WP_103803302.1 comG operon protein ComGB Machinery gene
  C2H94_RS01745 (C2H94_01730) comGA 293527..294597 (-) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  C2H94_RS01750 (C2H94_01735) - 294808..295005 (-) 198 WP_103803301.1 hypothetical protein -
  C2H94_RS01755 (C2H94_01740) corA 295007..295960 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 13287.32 Da        Isoelectric Point: 5.1901

>NTDB_id=265432 C2H94_RS01725 WP_063335293.1 291441..291788(-) (comGE) [Bacillus subtilis strain PK5_52]
MWRENKGFSTIETMSALSLWLFVLLTVVPLWDKLMSDEKMAESREIGYQMMNESISKYVMSGEGAASKTITKNNHIYAMK
WEEEGEYQNVCIKAAAYKEKSFCLSILQTEWLHAS

Nucleotide


Download         Length: 348 bp        

>NTDB_id=265432 C2H94_RS01725 WP_063335293.1 291441..291788(-) (comGE) [Bacillus subtilis strain PK5_52]
ATGTGGAGAGAAAATAAAGGTTTTTCTACAATAGAAACAATGTCTGCGCTAAGCCTGTGGCTGTTTGTGCTGCTGACAGT
CGTCCCCTTGTGGGACAAGCTGATGTCTGATGAAAAAATGGCGGAATCACGAGAAATTGGCTATCAGATGATGAATGAGA
GCATTAGCAAATATGTCATGAGTGGTGAAGGAGCCGCGTCAAAAACGATTACAAAGAACAATCATATCTATGCAATGAAG
TGGGAGGAGGAGGGCGAATATCAAAACGTATGTATCAAAGCCGCAGCTTATAAAGAAAAATCATTTTGCCTCAGCATTTT
GCAGACAGAATGGCTACACGCTTCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Bacillus subtilis subsp. subtilis str. 168

99.13

100

0.991

Multiple sequence alignment