Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LSEI_RS00050 Genome accession   NC_008526
Coordinates   11419..12015 (+) Length   198 a.a.
NCBI ID   WP_003662304.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei ATCC 334     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6419..17015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSEI_RS00030 (LSEI_0006) gyrA 6920..9541 (+) 2622 WP_011673928.1 DNA gyrase subunit A -
  LSEI_RS00035 (LSEI_0007) deoC 9646..10350 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  LSEI_RS00040 (LSEI_0008) ssb 10533..10964 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  LSEI_RS00045 (LSEI_0009) rpsF 11092..11388 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  LSEI_RS00050 (LSEI_0010) ssb 11419..12015 (+) 597 WP_003662304.1 single-stranded DNA-binding protein Machinery gene
  LSEI_RS00055 (LSEI_0011) rpsR 12102..12338 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LSEI_RS00060 - 12780..14257 (+) 1478 Protein_11 cytochrome ubiquinol oxidase subunit I -
  LSEI_RS00065 cydB 14250..15269 (+) 1020 WP_003662302.1 cytochrome d ubiquinol oxidase subunit II -
  LSEI_RS00070 (LSEI_0013) - 15296..15490 (+) 195 WP_003600287.1 hypothetical protein -
  LSEI_RS00075 (LSEI_0014) - 15908..16126 (+) 219 WP_011673930.1 Blp family class II bacteriocin -
  LSEI_RS00080 (LSEI_0016) - 16311..16526 (+) 216 WP_011673932.1 Blp family class II bacteriocin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21148.91 Da        Isoelectric Point: 4.9056

>NTDB_id=26517 LSEI_RS00050 WP_003662304.1 11419..12015(+) (ssb) [Lacticaseibacillus paracasei ATCC 334]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=26517 LSEI_RS00050 WP_003662304.1 11419..12015(+) (ssb) [Lacticaseibacillus paracasei ATCC 334]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5

Multiple sequence alignment