Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BS11774_RS11580 Genome accession   NZ_CP026010
Coordinates   2206075..2206653 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2201075..2211653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS11560 (BS11774_11510) hemAT 2201586..2202884 (-) 1299 WP_064671445.1 heme-based aerotactic transducer HemAT -
  BS11774_RS11565 (BS11774_11515) comW 2203023..2204552 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  BS11774_RS11570 (BS11774_11520) yhxC 2204664..2205521 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BS11774_RS11575 (BS11774_11525) yhzC 2205549..2205782 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BS11774_RS11580 (BS11774_11530) comK 2206075..2206653 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  BS11774_RS11585 (BS11774_11535) yhxD 2206700..2207599 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BS11774_RS11590 (BS11774_11540) yhjA 2207816..2208085 (+) 270 WP_128473785.1 excalibur calcium-binding domain-containing protein -
  BS11774_RS11595 (BS11774_11545) yhjB 2208129..2209598 (-) 1470 WP_128473786.1 sodium:solute symporter -
  BS11774_RS11600 (BS11774_11550) yhjC 2209595..2209795 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  BS11774_RS11605 (BS11774_11555) - 2210003..2210365 (-) 363 WP_003233132.1 hypothetical protein -
  BS11774_RS11610 (BS11774_11560) yhjE 2210517..2211140 (+) 624 WP_010886465.1 VTT domain-containing protein -
  BS11774_RS11615 (BS11774_11565) lepB 2211142..2211648 (+) 507 WP_128473787.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=264980 BS11774_RS11580 WP_029317573.1 2206075..2206653(+) (comK) [Bacillus subtilis strain ATCC 11774]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=264980 BS11774_RS11580 WP_029317573.1 2206075..2206653(+) (comK) [Bacillus subtilis strain ATCC 11774]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment