Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BS11774_RS02660 Genome accession   NZ_CP026010
Coordinates   503137..503859 (-) Length   240 a.a.
NCBI ID   WP_128473321.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498137..508859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS02625 (BS11774_02615) fliW 498276..498707 (-) 432 WP_029725990.1 flagellar assembly protein FliW -
  BS11774_RS02630 (BS11774_02620) yviE 498728..499303 (-) 576 WP_014481045.1 DUF6470 family protein -
  BS11774_RS02635 (BS11774_02625) flgL 499350..500246 (-) 897 WP_128473320.1 flagellar hook-associated protein FlgL -
  BS11774_RS02640 (BS11774_02630) flgK 500257..501780 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  BS11774_RS02645 (BS11774_02635) flgN 501799..502281 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BS11774_RS02650 (BS11774_02640) flgM 502297..502563 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  BS11774_RS02655 (BS11774_02645) yvyF 502644..503063 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BS11774_RS02660 (BS11774_02650) comFC 503137..503859 (-) 723 WP_128473321.1 comF operon protein ComFC Machinery gene
  BS11774_RS02665 (BS11774_02655) comFB 503823..504119 (-) 297 WP_043858782.1 late competence protein ComFB -
  BS11774_RS02670 (BS11774_02660) comFA 504179..505570 (-) 1392 WP_128473322.1 ATP-dependent helicase ComFA Machinery gene
  BS11774_RS02675 (BS11774_02665) fakBA 505676..506521 (-) 846 WP_085185615.1 DegV family protein -
  BS11774_RS02680 (BS11774_02670) degU 506619..507308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BS11774_RS02685 (BS11774_02675) degS 507391..508548 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27513.76 Da        Isoelectric Point: 9.1345

>NTDB_id=264952 BS11774_RS02660 WP_128473321.1 503137..503859(-) (comFC) [Bacillus subtilis strain ATCC 11774]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=264952 BS11774_RS02660 WP_128473321.1 503137..503859(-) (comFC) [Bacillus subtilis strain ATCC 11774]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGTG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983

Multiple sequence alignment