Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BS11774_RS02670 Genome accession   NZ_CP026010
Coordinates   504179..505570 (-) Length   463 a.a.
NCBI ID   WP_128473322.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 499179..510570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS02635 (BS11774_02625) flgL 499350..500246 (-) 897 WP_128473320.1 flagellar hook-associated protein FlgL -
  BS11774_RS02640 (BS11774_02630) flgK 500257..501780 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  BS11774_RS02645 (BS11774_02635) flgN 501799..502281 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BS11774_RS02650 (BS11774_02640) flgM 502297..502563 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  BS11774_RS02655 (BS11774_02645) yvyF 502644..503063 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  BS11774_RS02660 (BS11774_02650) comFC 503137..503859 (-) 723 WP_128473321.1 comF operon protein ComFC Machinery gene
  BS11774_RS02665 (BS11774_02655) comFB 503823..504119 (-) 297 WP_043858782.1 late competence protein ComFB -
  BS11774_RS02670 (BS11774_02660) comFA 504179..505570 (-) 1392 WP_128473322.1 ATP-dependent helicase ComFA Machinery gene
  BS11774_RS02675 (BS11774_02665) fakBA 505676..506521 (-) 846 WP_085185615.1 DegV family protein -
  BS11774_RS02680 (BS11774_02670) degU 506619..507308 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BS11774_RS02685 (BS11774_02675) degS 507391..508548 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BS11774_RS02690 (BS11774_02680) yvyE 508765..509418 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52588.67 Da        Isoelectric Point: 10.0584

>NTDB_id=264953 BS11774_RS02670 WP_128473322.1 504179..505570(-) (comFA) [Bacillus subtilis strain ATCC 11774]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEDPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNKLAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=264953 BS11774_RS02670 WP_128473322.1 504179..505570(-) (comFA) [Bacillus subtilis strain ATCC 11774]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGATCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAATAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATTTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATA
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.92

100

0.989

Multiple sequence alignment