Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV160_RS08990 Genome accession   NZ_CP031336
Coordinates   1497462..1499489 (-) Length   675 a.a.
NCBI ID   WP_002224487.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21717     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492462..1504489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV160_RS08965 uvrC 1492637..1494523 (+) 1887 WP_002220860.1 excinuclease ABC subunit UvrC -
  DV160_RS08970 - 1494640..1496044 (+) 1405 Protein_1448 tetratricopeptide repeat protein -
  DV160_RS08975 trmB 1496166..1496882 (+) 717 WP_002220858.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV160_RS08985 - 1497063..1497350 (-) 288 WP_002241665.1 hypothetical protein -
  DV160_RS08990 uvrB 1497462..1499489 (-) 2028 WP_002224487.1 excinuclease ABC subunit UvrB Machinery gene
  DV160_RS08995 - 1499818..1501302 (-) 1485 WP_002220855.1 S41 family peptidase -
  DV160_RS09000 - 1501422..1503212 (-) 1791 WP_002220854.1 murein hydrolase activator EnvC family protein -
  DV160_RS09010 - 1503540..1504100 (+) 561 WP_002219151.1 CreA family protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76872.33 Da        Isoelectric Point: 4.9632

>NTDB_id=264838 DV160_RS08990 WP_002224487.1 1497462..1499489(-) (uvrB) [Neisseria meningitidis strain M21717]
MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
IQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
SKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGSE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=264838 DV160_RS08990 WP_002224487.1 1497462..1499489(-) (uvrB) [Neisseria meningitidis strain M21717]
ATGGAAGTCATCCGATACCCCGATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTAT
TGCCGGCTTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGACCTGTTCATTGAAAAAGACAGCGCGATCAACGAACATATCGAGCAGATGCGCCTTTCCGCCACCA
AGAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATCTACGGTATCGGCGACCCGACCGAGTAT
CAGCAAATGGTGTTGTCCGTTAAAGAAGGCGACACCATTGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAGCGCGGCGATTTGGACTTTAAACGCGGCAGCTTCCGCGTGCGTGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTT
ATCCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCATTACGTTACCCCGCGCGATACCGTCTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTACGTGAACGCATTGATTTCTTTACCAAAGAAAACCGTCCCGTCGAACAACAACGCATCGAAC
AGCGCACCCGCTTTGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAATTACTCCCGGCACTTCTCC
AGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCTGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCATGAATTTGAAAAAGTCATGCCGCAAACTGTCTTCGTTTCCGCC
ACTCCAGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGACGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TTCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATTGATACCGTAGAGCGCGTTGAAATCATTAGAGATTTACGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGATATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCACACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCGATTCTGTACGCCGAC
AAAATCACCGACTCTATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGTGAAAAACAAATTAAATTCAACGAAGAACA
CGGCATCGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATTGACGGCGTGTACCACGAAGAAGACGGTGGTAAAG
GCCGTAGACAAGGCAAAAACAAGGTTAAAGTCAGCGAAATTCACAACGAAGAAGACGCGGTTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTACTGAGGGATAGGATACGGGGGATTAA
GGAAGGGTTGTTGTTTGGGAGTGAGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(635-668)

UvrB interaction domain (UvrB_inter)

(165-255)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Type III restriction enzyme, res subunit (ResIII)

(23-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.505

98.222

0.545
  uvrB Streptococcus pneumoniae R6

55.505

98.222

0.545
  uvrB Streptococcus pneumoniae D39

55.505

98.222

0.545