Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV178_RS11685 Genome accession   NZ_CP031335
Coordinates   1968542..1970569 (-) Length   675 a.a.
NCBI ID   WP_063399715.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M25964     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1963542..1975569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV178_RS11660 uvrC 1963717..1965603 (+) 1887 WP_002220860.1 excinuclease ABC subunit UvrC -
  DV178_RS11665 - 1965720..1967124 (+) 1405 Protein_1935 tetratricopeptide repeat protein -
  DV178_RS11670 trmB 1967246..1967962 (+) 717 WP_002220858.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV178_RS11680 - 1968143..1968430 (-) 288 WP_002241665.1 hypothetical protein -
  DV178_RS11685 uvrB 1968542..1970569 (-) 2028 WP_063399715.1 excinuclease ABC subunit UvrB Machinery gene
  DV178_RS11690 - 1970898..1972382 (-) 1485 WP_002220855.1 S41 family peptidase -
  DV178_RS11695 - 1972509..1974314 (-) 1806 WP_002248066.1 peptidoglycan DD-metalloendopeptidase family protein -
  DV178_RS11705 - 1974642..1975202 (+) 561 WP_002248067.1 CreA family protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76856.33 Da        Isoelectric Point: 4.9632

>NTDB_id=264782 DV178_RS11685 WP_063399715.1 1968542..1970569(-) (uvrB) [Neisseria meningitidis strain M25964]
MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
IQRVGRYTVFPSSHYVTPRDTLLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGSE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=264782 DV178_RS11685 WP_063399715.1 1968542..1970569(-) (uvrB) [Neisseria meningitidis strain M25964]
ATGGAAGTCATCCGATACCCCGATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTAT
TGCCGGCTTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGACCTGTTCATTGAAAAAGACAGCGCGATCAACGAACATATCGAGCAGATGCGCCTTTCCGCCACCA
AGAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATCTACGGTATCGGCGACCCGACCGAGTAT
CAGCAAATGGTGTTGTCCGTTAAAGAAGGCGACACCATTGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAGCGCGGCGATTTGGACTTTAAACGCGGCAGCTTCCGCGTGCGTGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGCATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTT
ATCCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCATTACGTTACCCCGCGCGATACCCTCTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTACGTGAACGCATTGATTTCTTTACCAAAGAAAACCGTCCCGTCGAACAACAACGCATCGAAC
AGCGCACCCGCTTTGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAATTACTCCCGGCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCTGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCATGAATTTGAAAAAGTCATGCCGCAAACTGTCTTCGTTTCCGCC
ACTCCAGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGACGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TTCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATTGATACCGTAGAGCGCGTTGAAATCATTAGAGATTTACGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGATATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCACACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCGATTCTGTACGCCGAC
AAAATCACCGACTCTATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGTGAAAAACAAATTAAATTCAACGAAGAACA
CGGCATCGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATTGACGGCGTGTACCACGAAGAAGACGGTGGTAAAG
GCCGTAGACAAGGCAAAAACAAGGTTAAAGTCAGCGAAATTCACAACGAAGAAGACGCGGTTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTACTGAGGGATAGGATACGGGGGATTAA
GGAAGGGTTGTTGTTTGGGAGTGAGTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB/uvrC motif (UVR)

(635-668)

UvrB interaction domain (UvrB_inter)

(165-255)

Ultra-violet resistance protein B (UvrB)

(557-598)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae R6

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae D39

55.656

98.222

0.547