Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV166_RS11995 Genome accession   NZ_CP031334
Coordinates   2028592..2030682 (-) Length   696 a.a.
NCBI ID   WP_162819012.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2023592..2035682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS11965 - 2024885..2026288 (+) 1404 WP_042745176.1 tetratricopeptide repeat protein -
  DV166_RS11970 trmB 2026410..2027126 (+) 717 WP_014581427.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV166_RS14330 - 2027601..2027672 (-) 72 Protein_1958 transposase -
  DV166_RS14615 - 2027791..2028036 (-) 246 WP_143726455.1 hypothetical protein -
  DV166_RS14620 - 2028129..2028581 (-) 453 WP_002233976.1 hypothetical protein -
  DV166_RS11995 uvrB 2028592..2030682 (-) 2091 WP_162819012.1 excinuclease ABC subunit UvrB Machinery gene
  DV166_RS12000 - 2030720..2031541 (-) 822 WP_061704766.1 DUF1963 domain-containing protein -
  DV166_RS12005 - 2031602..2033086 (-) 1485 WP_002235876.1 S41 family peptidase -
  DV166_RS12010 - 2033206..2035011 (-) 1806 WP_002227254.1 murein hydrolase activator EnvC -

Sequence

Protein


Download         Length: 696 a.a.        Molecular weight: 79630.75 Da        Isoelectric Point: 5.4394

>NTDB_id=264712 DV166_RS11995 WP_162819012.1 2028592..2030682(-) (uvrB) [Neisseria meningitidis strain M22293]
MPSERRFRPIPTTRFVRKRITGKIMEVIRYPDSPFKLHQPFPPAGDQPTAIADLLEGLSDGLAYQTLLGVTGSGKTYTMA
NVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNL
MTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSEN
ALRISLFDDEIDRLDMFDPLSGSLHQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRT
RFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPS
ARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLV
TTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS
HRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKGRL
KGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRGIKENLLF

Nucleotide


Download         Length: 2091 bp        

>NTDB_id=264712 DV166_RS11995 WP_162819012.1 2028592..2030682(-) (uvrB) [Neisseria meningitidis strain M22293]
ATGCCGTCTGAAAGACGTTTCCGACCCATCCCTACTACACGCTTTGTCCGCAAACGCATCACAGGCAAGATTATGGAAGT
CATTCGATACCCCGATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTATTGCCGACT
TGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACACCATGGCG
AACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTATGCCGAAAT
GCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTATGTGCCAA
GCCGCGATTTGTTCATCGAAAAAGACAGTGCGATCAACGAACACATTGAACAAATGCGCCTTTCTGCCACCAAAAACCTG
ATGACGCGCGATGACGTGATTATCGTTGCCACTGTGTCCGCCATTTACGGTATCGGCGACCCGACTGAGTATCAACAAAT
GGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTACGAACGCG
GCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCTCCGAAAAC
GCCTTGCGTATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTTGACCCGCTTTCAGGCAGCCTGCACCAACG
CGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGAGTCCATCA
AAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAACAGCGCACC
CGTTTCGATTTGGAAATGCTCTACGAAATGGGCTTCTGTAAAGGAATCGAAAACTACTCCCGCCACTTCTCCGGCAAAAA
AGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCACGTTACCG
TTACCCAAATCGGCGGCATGTACAAAGGCGACGCCTCGCGCAAACAAAACCTCGTAGATTACGGCTTCCGCCTGCCTTCC
GCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCCACTCCCGC
CAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGTCCCACAGGGCTGGTCGACCCCCAAATCATCA
TCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCGTACTCGTT
ACCACCCTCACCAAACGTATGGCGGAGCAACTCACCGACTATTACAGTGAACTCGGCATCAAAGTGCGCTACCTGCACAG
CGACATCGATACCGTCGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGTCTGTTTGACGTACTCGTCGGCATCAACC
TCTTGCGCGAAGGCCTCGACATCCCCGAAGTCTCCCTTGTTGCCATCCTCGACGCCGACAAAGAAGGCTTCCTGCGCTCC
CACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCGATTCTGTACGCCGACAAAATCAC
CGACTCTATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGTGAAAAACAAATTAAATTCAACGAAGAACACGGCATCG
TGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATTGACGGCGTGTACCACGAAGAAGACAGCGGCAAAGGTCGTCTG
AAAGGCAAAAACAAGGTTAAAGTCGGCGAAATCCACAACGAAGAAGACGCAATTAAAGAAATCGCCAAACTGGAAAAAGC
CATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTGTTGCGGGATAGGATTCGGGGGATTAAGGAGAATT
TATTATTTTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(581-622)

Type III restriction enzyme, res subunit (ResIII)

(47-168)

Helicase conserved C-terminal domain (Helicase_C)

(468-573)

UvrB/uvrC motif (UVR)

(659-692)

UvrB interaction domain (UvrB_inter)

(189-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.505

95.259

0.529
  uvrB Streptococcus pneumoniae R6

55.505

95.259

0.529
  uvrB Streptococcus pneumoniae D39

55.505

95.259

0.529