Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV143_RS03105 Genome accession   NZ_CP031333
Coordinates   503083..505182 (-) Length   699 a.a.
NCBI ID   WP_162819252.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 498083..510182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS03080 - 499739..501142 (+) 1404 WP_014581428.1 tetratricopeptide repeat protein -
  DV143_RS03085 trmB 501264..501980 (+) 717 WP_014581427.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV143_RS03100 - 502608..502970 (-) 363 WP_002222360.1 hypothetical protein -
  DV143_RS03105 uvrB 503083..505182 (-) 2100 WP_162819252.1 excinuclease ABC subunit UvrB Machinery gene
  DV143_RS14265 - 505283..505429 (-) 147 WP_153308396.1 hypothetical protein -
  DV143_RS03110 - 505439..506923 (-) 1485 WP_061732528.1 S41 family peptidase -
  DV143_RS03115 - 507043..508848 (-) 1806 WP_002227254.1 murein hydrolase activator EnvC -
  DV143_RS03125 - 509176..509736 (+) 561 WP_002219151.1 CreA family protein -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 79748.88 Da        Isoelectric Point: 5.2854

>NTDB_id=264598 DV143_RS03105 WP_162819252.1 503083..505182(-) (uvrB) [Neisseria meningitidis strain M18727]
MPSERRFRPIPTTHFVRKRITGKIMEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMA
NVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNL
MTRDDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIAQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSEN
ALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRT
RFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPS
ARDNRPLKFHEFEKVMPQTVFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLV
TTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS
HRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEEDGSKGRL
KGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKENLLFGAE

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=264598 DV143_RS03105 WP_162819252.1 503083..505182(-) (uvrB) [Neisseria meningitidis strain M18727]
ATGCCGTCTGAAAGACGTTTCCGACCCATCCCTACTACACACTTTGTCCGCAAACGCATCACAGGCAAGATTATGGAAGT
TATCCAATACCCAAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCCACCGCCATTGCAGGCC
TGCTCGAAGGGCTTTCAGACGGCCTTGCCTATCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACACCATGGCG
AACGTCATCGCCCAAAGCGGCCGCCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTACGCCGAAAT
GCGCGAATTTTTCCCCGAAAACGCAGTGGAATATTTCGTCTCCTACTACGACTATTACCAGCCCGAAGCCTATGTGCCCA
GCCGCGACTTGTTCATCGAAAAAGACAGCGCGATCAATGAACACATCGAACAAATGCGCCTTTCCGCCACCAAAAACCTG
ATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTATCAACAAAT
GGTGTTGTCCGTCAAAGAAGGCGATACCATAGCCCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTACGAACGCG
GCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCTCCGAAAAC
GCCTTGCGTATCAGCCTGTTCGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTTATTCAACG
CGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGAGTCCATCA
AAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAACAACGCACC
CGCTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAATTATTCCCGCCACTTCTCCGGCAAAAA
AGAAGGCGAACCGCCGCCCACGCTGATGGACTATCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCACGTTACCG
TTACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAACAAAACCTCGTCGACTACGGCTTCCGCCTGCCTTCC
GCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCTACTCCCGC
CAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCTACAGGGCTGGTCGACCCCCAAATCATCA
TCCGCCCCGTCGCCACCCAAGTCGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCGTTCTCGTT
ACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGTATCAAAGTGCGCTACCTGCACAG
CGACATCGACACCGTAGAGCGCGTTGAAATTATTAGAGATTTGCGGCTTGGACTGTTTGACGTACTTGTCGGCATCAACC
TCTTGCGCGAAGGCTTGGACATCCCCGAAGTCTCCCTTGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCCTGCGCTCG
CACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAATGGCGTTGCAATTTTGTATGCCGACAAAATCAC
CGACTCCATGAAAGCCGCTATCGACGAAACCGAACGCCGCCGTGAAAAACAGATTAAATTCAACGAAGAACAGGGCATCG
TGCCGCAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACGGCAGTAAAGGCCGTCTG
AAAGGTAAAAACAAGGTTAAAGTGGGCGAGATTCACAACGAAGAAGATGCGATTAAAGAAATCGCCAAACTCGAAAAAGC
CATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTGTTGCGGGATAGGATTAGGGATATTAAAGAGAATT
TGTTGTTTGGGGCGGAGTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(47-168)

UvrB interaction domain (UvrB_inter)

(189-279)

UvrB/uvrC motif (UVR)

(659-692)

Helicase conserved C-terminal domain (Helicase_C)

(468-573)

Ultra-violet resistance protein B (UvrB)

(581-622)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.204

94.85

0.524
  uvrB Streptococcus pneumoniae R6

55.204

94.85

0.524
  uvrB Streptococcus pneumoniae D39

55.204

94.85

0.524