Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV163_RS01110 Genome accession   NZ_CP031330
Coordinates   200851..202950 (+) Length   699 a.a.
NCBI ID   WP_014581426.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195851..207950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS01090 - 196305..196865 (-) 561 WP_002222356.1 CreA family protein -
  DV163_RS01100 - 197193..198983 (+) 1791 WP_002222357.1 murein hydrolase activator EnvC -
  DV163_RS01105 - 199110..200594 (+) 1485 WP_002225159.1 S41 family peptidase -
  DV163_RS01110 uvrB 200851..202950 (+) 2100 WP_014581426.1 excinuclease ABC subunit UvrB Machinery gene
  DV163_RS01115 - 203063..203425 (+) 363 WP_002222360.1 hypothetical protein -
  DV163_RS01130 trmB 204053..204769 (-) 717 WP_002222361.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV163_RS14215 - 204891..205133 (-) 243 WP_324186133.1 hypothetical protein -
  DV163_RS14220 - 205093..205221 (-) 129 WP_324186134.1 hypothetical protein -
  DV163_RS14225 - 205524..206324 (-) 801 Protein_176 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 79809.96 Da        Isoelectric Point: 5.2277

>NTDB_id=264446 DV163_RS01110 WP_014581426.1 200851..202950(+) (uvrB) [Neisseria meningitidis strain M21955]
MPSERRFRPIPTARFVRKRITGKIMEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMA
NVIAQSGRPAIIMAHNKTLAAQLYAEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNL
MTRNDVIIVATVSAIYGIGDPTEYQQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSEN
ALRISLFDDEIDRLDMFDPLSGSLIQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRT
RFDLEMLYEMGFCKGIENYSRHFSGKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPS
ARDNRPLKFHEFEKVMPQTIFVSATPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIEKGERVLV
TTLTKRMAEQLTDYYSELGIKVRYLHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRS
HRSLIQTIGRAARNVNGVAILYADKITDSMKAAIDETERRREKQIKFNEEQGIVPQQIKKQVKDIIDGVYHEEDGSKGRL
KGKNKVKVGEIHNEEDAIKEIAKLEKAMQQAARDLQFEEAAVLRDRIRDIKENLLFGAE

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=264446 DV163_RS01110 WP_014581426.1 200851..202950(+) (uvrB) [Neisseria meningitidis strain M21955]
ATGCCGTCTGAAAGACGTTTCCGACCCATCCCTACTGCACGCTTTGTCCGCAAACGCATCACAGGCAAGATTATGGAAGT
TATCCAATACCCAAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCCACCGCCATTGCAGGCC
TGCTCGAAGGGCTTTCAGACGGCCTTGCCTATCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACACCATGGCG
AACGTCATCGCCCAAAGCGGCCGCCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTACGCCGAAAT
GCGCGAATTTTTCCCCGAAAACGCAGTGGAATATTTCGTCTCCTACTACGACTATTACCAGCCCGAAGCCTATGTGCCCA
GCCGCGATTTGTTCATCGAAAAAGACAGCGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCAAAAACCTA
ATGACGCGCAACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTATCAACAAAT
GGTGTTGTCCGTCAAAGAAGGCGATACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAATACGAACGCG
GCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCTCCGAAAAC
GCCTTACGCATCAGCCTGTTTGATGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTTATCCAGCG
CGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTCTTGCGCGCCTGCGAGTCCATCA
AAGAAGAATTACGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAACAACAACGCATCGAACAGCGCACC
CGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGAATCGAAAACTACTCCCGCCACTTTTCCGGCAAAAA
AGAAGGCGAACCGCCGCCTACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCACGTTACCG
TAACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCCTGCCTTCA
GCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCATCTTCGTTTCCGCTACCCCCGC
CAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTTGATCCCCAAATCATCA
TCCGCCCCGTTGCCACCCAAGTCGACGACTTAATGAGCGAAATCAACGACCGCATTGAAAAAGGCGAACGCGTACTCGTT
ACTACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGTATCAAAGTGCGCTACCTGCACAG
CGACATCGACACCGTCGAGCGCGTTGAAATCATTAGAGATTTACGGCTCGGCCTGTTTGACGTACTCGTCGGCATCAACC
TCTTACGCGAAGGCCTCGACATCCCCGAAGTCTCTCTCGTCGCCATCCTCGACGCAGATAAAGAAGGCTTCCTGCGCTCC
CACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGACAAAATTAC
CGACTCCATGAAAGCCGCTATCGACGAAACCGAACGCCGCCGTGAAAAACAGATTAAATTCAACGAAGAACAGGGCATCG
TGCCGCAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACGGCAGTAAAGGCCGTCTG
AAAGGTAAAAACAAGGTTAAAGTGGGCGAGATTCACAACGAAGAAGATGCGATTAAAGAAATCGCCAAACTCGAAAAAGC
CATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTGTTGCGGGATAGGATTAGGGATATTAAAGAGAATT
TGTTGTTTGGGGCGGAGTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(468-573)

Ultra-violet resistance protein B (UvrB)

(581-622)

Type III restriction enzyme, res subunit (ResIII)

(47-168)

UvrB/uvrC motif (UVR)

(659-692)

UvrB interaction domain (UvrB_inter)

(189-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.354

94.85

0.525
  uvrB Streptococcus pneumoniae R6

55.354

94.85

0.525
  uvrB Streptococcus pneumoniae D39

55.354

94.85

0.525