Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV167_RS02330 Genome accession   NZ_CP031329
Coordinates   423797..425824 (+) Length   675 a.a.
NCBI ID   WP_002251380.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 418797..430824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS02310 - 419180..419740 (-) 561 WP_002217027.1 CreA family protein -
  DV167_RS02320 - 420068..421873 (+) 1806 WP_002251382.1 murein hydrolase activator EnvC -
  DV167_RS02325 - 421993..423468 (+) 1476 WP_002251381.1 S41 family peptidase -
  DV167_RS02330 uvrB 423797..425824 (+) 2028 WP_002251380.1 excinuclease ABC subunit UvrB Machinery gene
  DV167_RS02335 - 425937..426299 (+) 363 WP_002222360.1 hypothetical protein -
  DV167_RS02350 trmB 426927..427643 (-) 717 WP_002251379.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV167_RS14180 - 427765..428007 (-) 243 WP_324186133.1 hypothetical protein -
  DV167_RS14185 - 427967..428095 (-) 129 WP_324186134.1 hypothetical protein -
  DV167_RS14190 - 428398..429198 (-) 801 Protein_368 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76906.39 Da        Isoelectric Point: 4.9653

>NTDB_id=264381 DV167_RS02330 WP_002251380.1 423797..425824(+) (uvrB) [Neisseria meningitidis strain M22425]
MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRDIKENLLFGAE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=264381 DV167_RS02330 WP_002251380.1 423797..425824(+) (uvrB) [Neisseria meningitidis strain M22425]
ATGGAAGTCATCCGATACCCCGATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTAT
TGCCGGCTTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCAAGCCGCGATTTGTTCATCGAAAAAGACAGTGCGATCAACGAACACATTGAACAAATGCGCCTTTCTGCCACCA
AAAACCTGATGACGCGCGATGACGTGATTATCGTTGCCACTGTGTCCGCCATTTACGGTATCGGCGACCCGACTGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGATTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGTATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTTGACCCGCTTTCAGGCAGCCTG
CACCAACGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTATTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTGCGCGAACGCATTGATTTCTTTACCAAAGAAAACCGTCCCGTCGAGCAACAACGCATCGAAC
AGCGCACCCGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGTATCGAAAACTACTCCCGTCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACACAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTGGACTACGGCTTCCGCC
TACCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGTCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGTATTCAAAAAGGCGAACGTG
TGCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTACGCTAC
CTGCACAGCGACATCGACACCGTAGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCCCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCACGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAT
AAAATCACCGACTCCATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTCAACGAAGAACA
CGGCATCGTACCGCAGCAGATTAAAAAACAGGTAAAAGACATTATCGACGGCGTGTACCACGAAGAAGACGGCGGAAAAG
GCCGTCTGAAAGGTAAAAACAAGGTTAAAGTGGGCGAGATTCACAACGAAGAAGATGCGATTAAAGAAATCGCCAAACTC
GAAAAAGCCATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTGTTGCGGGATAGGATTAGGGATATTAA
AGAGAATTTGTTGTTTGGGGCGGAGTGA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(635-668)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB interaction domain (UvrB_inter)

(165-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae R6

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae D39

55.656

98.222

0.547