Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV144_RS08050 Genome accession   NZ_CP031328
Coordinates   1357366..1359393 (+) Length   675 a.a.
NCBI ID   WP_101092774.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1352366..1364393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS08030 - 1352740..1353300 (-) 561 WP_002219151.1 CreA family protein -
  DV144_RS08040 - 1353628..1355433 (+) 1806 WP_002219152.1 murein hydrolase activator EnvC -
  DV144_RS08045 - 1355553..1357037 (+) 1485 WP_002220855.1 S41 family peptidase -
  DV144_RS08050 uvrB 1357366..1359393 (+) 2028 WP_101092774.1 excinuclease ABC subunit UvrB Machinery gene
  DV144_RS08055 - 1359477..1360373 (+) 897 WP_002239142.1 hypothetical protein -
  DV144_RS08060 - 1360517..1360864 (-) 348 WP_002239141.1 hypothetical protein -
  DV144_RS08070 trmB 1361182..1361898 (-) 717 WP_002239140.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DV144_RS14345 - 1362020..1362262 (-) 243 WP_324186174.1 hypothetical protein -
  DV144_RS14350 - 1362222..1362350 (-) 129 WP_324186134.1 hypothetical protein -
  DV144_RS14355 - 1362653..1363423 (-) 771 Protein_1300 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76768.26 Da        Isoelectric Point: 5.0010

>NTDB_id=264332 DV144_RS08050 WP_101092774.1 1357366..1359393(+) (uvrB) [Neisseria meningitidis strain M18755]
MEVIRYPDSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIAQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
IQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIDFFTKENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRRQGKNKVKVSEIHNEEDAVKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGAE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=264332 DV144_RS08050 WP_101092774.1 1357366..1359393(+) (uvrB) [Neisseria meningitidis strain M18755]
ATGGAAGTCATCCGATACCCCGATTCCCCTTTCAAACTCCACCAACCCTTCCCGCCCGCAGGCGACCAGCCTACCGCTAT
TGCCGGCTTGCTCGAAGGGCTTTCAGACGGCCTTGCCTACCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCGAACGTCATCGCCCAAAGCGGCCGACCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTTTAT
GCCGAAATGCGCGAGTTTTTCCCTGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGACTTGTTCATCGAAAAAGACAGCGCGATCAATGAACACATCGAACAAATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGATACCATAGCCCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAACGCCTTGCGTATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTT
ATCCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCATTACGTTACCCCGCGCGATACCGTCTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTACGTGAACGCATTGATTTCTTTACCAAAGAAAACCGTCCCGTCGAACAACAACGCATCGAAC
AGCGCACCCGCTTTGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAATTACTCCCGGCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCTGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGACTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCATGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACTCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TTCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATTGATACCGTAGAGCGCGTTGAAATCATTAGAGATTTACGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCCTCGATATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCACACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCGATTCTGTACGCCGAC
AAAATCACCGACTCTATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGTGAAAAACAAATTAAATTCAACGAAGAACA
CGGCATCGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATTGACGGCGTGTACCACGAAGAAGACGGTGGTAAAG
GCCGTAGACAAGGCAAAAACAAGGTTAAAGTCAGCGAAATTCACAACGAAGAAGACGCGGTTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAGGCGGCTGTACTGAGGGATAGGATACGGGGGATTAA
GGAAGGGTTGTTGTTTGGGGCGGAGTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

UvrB interaction domain (UvrB_inter)

(165-255)

UvrB/uvrC motif (UVR)

(635-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae R6

55.656

98.222

0.547
  uvrB Streptococcus pneumoniae D39

55.656

98.222

0.547