Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   C1S76_RS12905 Genome accession   NZ_CP025796
Coordinates   2706267..2706860 (+) Length   197 a.a.
NCBI ID   WP_009705519.1    Uniprot ID   A0AAP9K910
Organism   Vibrio owensii strain 051011B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701267..2711860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS12890 - 2701947..2704517 (-) 2571 WP_045412019.1 penicillin-binding protein 1A -
  C1S76_RS12895 pilM 2704696..2705712 (+) 1017 WP_045412016.1 type IV pilus biogenesis protein PilM Machinery gene
  C1S76_RS12900 pilN 2705696..2706274 (+) 579 WP_005438427.1 PilN domain-containing protein Machinery gene
  C1S76_RS12905 pilO 2706267..2706860 (+) 594 WP_009705519.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S76_RS12910 pilP 2706850..2707365 (+) 516 WP_005438430.1 pilus assembly protein PilP Machinery gene
  C1S76_RS12915 pilQ 2707400..2709148 (+) 1749 WP_045412013.1 type IV pilus secretin PilQ Machinery gene
  C1S76_RS12920 aroK 2709338..2709856 (+) 519 WP_005438434.1 shikimate kinase AroK -
  C1S76_RS12925 aroB 2709888..2710988 (+) 1101 WP_005438436.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23042.65 Da        Isoelectric Point: 5.1105

>NTDB_id=263887 C1S76_RS12905 WP_009705519.1 2706267..2706860(+) (pilO) [Vibrio owensii strain 051011B]
MVNWQDLEMDEIAEWPLVPQLVVLLMLVLLIQGFGYWFYLKPEQARLDNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVKANTYQFKPEEKKDAK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=263887 C1S76_RS12905 WP_009705519.1 2706267..2706860(+) (pilO) [Vibrio owensii strain 051011B]
ATGGTTAATTGGCAAGACCTTGAAATGGATGAAATCGCTGAATGGCCGCTGGTGCCGCAGTTAGTGGTTCTCTTAATGCT
TGTGTTGCTGATTCAAGGTTTCGGTTACTGGTTCTATTTAAAGCCAGAGCAAGCGCGTTTGGACAATTTGATTCAAGAAG
AGCAAACCTTAAAAGTTGCGCTGAGAATCAAGGCCAATAAAGTGGCGGCTTTGCCTCAATTGCAATCACAACTCGATGAG
CTCACCACACGCTACGAACTGCTACTACAACAGCTGCCTGCACAAAAAGAGCTGGCTACCATGCTGGCTTCGGTGAATGA
ACTAGGAATCGATAACAAACTGACATTTACCCGCATTGATTGGGGAGAGAAACAGTCAGAGCACTTTCTTTATCGTCTGC
CGCTGAATATTGAACTCACTGGAGACTTTCATGATATCGGCCGTTTCTCTCAAGCCATCGCCACATTGCCACGCATCATC
ACGTTTAAAGACGTGACTTGGCAACGAGTGAGTCAAGAGAGTGAAACTTTGCACTTCCGTGTAAAAGCGAATACCTACCA
GTTCAAACCAGAGGAAAAGAAAGATGCGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

93.158

96.447

0.898
  pilO Vibrio cholerae strain A1552

72.251

96.954

0.701

Multiple sequence alignment