Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C1S76_RS12675 Genome accession   NZ_CP025796
Coordinates   2660116..2660748 (-) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio owensii strain 051011B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2655116..2665748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS12660 astA 2656330..2657349 (+) 1020 WP_045412733.1 arginine N-succinyltransferase -
  C1S76_RS12665 astD 2657378..2658835 (+) 1458 WP_045412730.1 succinylglutamate-semialdehyde dehydrogenase -
  C1S76_RS12670 - 2659098..2659889 (+) 792 WP_038892627.1 DUF1338 domain-containing protein -
  C1S76_RS12675 crp 2660116..2660748 (-) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  C1S76_RS12680 - 2660988..2661857 (-) 870 WP_005438358.1 phosphoribulokinase -
  C1S76_RS12685 - 2661982..2662194 (-) 213 WP_005432763.1 YheU family protein -
  C1S76_RS12690 - 2662260..2663267 (-) 1008 WP_045412728.1 hydrolase -
  C1S76_RS12695 - 2663368..2663847 (-) 480 WP_009705493.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=263884 C1S76_RS12675 WP_005381432.1 2660116..2660748(-) (crp) [Vibrio owensii strain 051011B]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=263884 C1S76_RS12675 WP_005381432.1 2660116..2660748(-) (crp) [Vibrio owensii strain 051011B]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAGGGCGACTTCATTGGTGAACTTGGTCTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAAATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCAAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment