Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   C1S73_RS05535 Genome accession   NZ_CP025792
Coordinates   1181713..1183971 (-) Length   752 a.a.
NCBI ID   WP_038866679.1    Uniprot ID   A0A2A2NEC3
Organism   Vibrio jasicida 090810c     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1176713..1188971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS05515 kdsB 1178005..1178760 (-) 756 WP_038866685.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C1S73_RS05520 - 1178760..1178939 (-) 180 WP_005378451.1 Trm112 family protein -
  C1S73_RS05525 lpxK 1178920..1179927 (-) 1008 WP_038866684.1 tetraacyldisaccharide 4'-kinase -
  C1S73_RS05530 msbA 1179933..1181681 (-) 1749 WP_038866683.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  C1S73_RS05535 comEC 1181713..1183971 (-) 2259 WP_038866679.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C1S73_RS05540 - 1183980..1184489 (+) 510 WP_005431694.1 DUF2062 domain-containing protein -
  C1S73_RS05545 lolE 1184689..1185933 (-) 1245 WP_038866676.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  C1S73_RS05550 lolD 1185936..1186643 (-) 708 WP_038866673.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  C1S73_RS05555 lolC 1186636..1187844 (-) 1209 WP_038866672.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  C1S73_RS05560 - 1188096..1188665 (+) 570 WP_038866671.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84237.34 Da        Isoelectric Point: 9.1238

>NTDB_id=263774 C1S73_RS05535 WP_038866679.1 1181713..1183971(-) (comEC) [Vibrio jasicida 090810c]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIIAIGSIIKLRRGLISIGVISGCMVVIVHGNVMEHQRQALFQAGV
NITIIGKVDSPFTQISHGYEGIAVVRGVNSQNLLPFLKPKIRLITPFPLPVNSDFTTQVSLKPILGLRNEAGFDSEQQAI
GQGIVARAASPRNAKWQIRSSYSVRQQIIQSVSGSISRLKHYPLINALAFSDRSLLTYQDWQLLRDSGLLHLVSISGLHI
GMAFSFGIFAGVALRYIFFNLQLLPPFIGIITAFLYAWLADFSLPTIRAFSVCVIYVSLKFWLVYWSTWRVLLLAVAIQL
CIEPFASLSLSFWLSYLSVVAVLLAVNAVQSHKGDWKGKLILLLKVQLVLTLLIVPISGYFFSGTSLTSIIYNLVFIPWF
GMIVVPLMFLALMFSLCSYFISAWFWQGMDWALWPLSWSLPFATGSWQFLSLKATLLVGVASVCLSLGRFFRANGLLLLL
LVTICVVFFHDSTRDRWRVDVLDVGHGLAVLIEKGGKVLLYDTGKGWGSGSIAEQVITPTLHRRGYDSIDGFIISHADSD
HAGGRQYIESAFNPTNKFSSQNYTDYKACVAGEYWSWQSLNMEVLWPPKLVQRAYNPHSCVIRVVDSQSGFRLLLTGDIE
AISEWILMREPEKLESDVMLVPHHGSKSSSNPKFVQAVSPKLAIASLAKSNQWGMPAENVVSAYEESKALWLDTGSDGQV
SVFIEQDNWHFEVKRSETFDPWYRQMLRKGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=263774 C1S73_RS05535 WP_038866679.1 1181713..1183971(-) (comEC) [Vibrio jasicida 090810c]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCATTATTTGTCGCGAGCGTTATTTCGTCAGCATGGTGGCCGACGATGCC
AGATTGGCGATGGTTGCTGCTGGGAATAATTGCCATTGGCTCAATAATCAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTTCGGGCTGTATGGTTGTTATTGTCCACGGCAATGTTATGGAACATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGGTGGTTCGCGG
GGTGAATTCTCAAAACCTGTTACCTTTTCTTAAACCGAAAATCCGTCTGATAACCCCTTTCCCACTGCCTGTTAACAGTG
ACTTTACTACTCAAGTTTCACTTAAACCCATTCTAGGGTTGAGAAATGAAGCGGGTTTTGATTCTGAGCAACAAGCCATT
GGACAGGGAATTGTTGCAAGGGCAGCGTCGCCACGTAATGCCAAGTGGCAGATTCGTTCTTCTTACTCTGTTCGTCAGCA
AATCATTCAGTCGGTTTCTGGAAGCATCTCGCGCCTCAAACATTATCCACTCATCAATGCGCTCGCCTTTAGTGACCGCT
CACTTTTAACGTATCAAGATTGGCAGCTGCTACGGGATAGTGGGTTATTGCACCTTGTCTCTATTTCCGGTTTGCATATT
GGGATGGCATTCAGTTTTGGTATTTTCGCCGGGGTTGCGCTTCGGTATATTTTTTTCAATCTCCAGCTGTTACCACCTTT
CATTGGGATTATCACTGCGTTTTTGTACGCTTGGCTTGCAGATTTTTCTTTGCCGACAATAAGAGCTTTTTCTGTCTGTG
TTATTTATGTGTCATTAAAGTTTTGGCTGGTGTATTGGAGCACTTGGCGTGTATTGCTGTTAGCAGTCGCTATTCAGCTT
TGCATTGAACCTTTTGCTTCTCTTAGTCTGAGTTTTTGGTTGTCGTATCTCTCTGTTGTTGCGGTACTGCTTGCGGTGAA
TGCCGTTCAGAGCCACAAGGGGGATTGGAAGGGCAAGTTGATCTTGTTGTTGAAAGTACAGTTAGTACTTACTTTGTTGA
TCGTGCCGATCAGTGGGTATTTCTTCTCTGGCACCAGTCTAACCTCAATTATTTATAACCTAGTATTTATACCTTGGTTT
GGGATGATTGTGGTTCCTCTGATGTTTCTTGCACTCATGTTTTCGCTTTGCTCTTATTTCATTTCGGCGTGGTTTTGGCA
AGGCATGGACTGGGCGCTATGGCCATTGAGTTGGTCTTTACCCTTTGCCACAGGGAGTTGGCAGTTTCTCAGTTTAAAAG
CAACGCTTCTTGTCGGTGTGGCAAGTGTTTGTCTTTCACTTGGTCGCTTTTTTCGGGCGAACGGACTGCTTTTATTACTT
TTGGTCACGATTTGTGTGGTGTTCTTTCATGATTCCACTAGAGACCGATGGCGAGTGGATGTTCTCGATGTCGGGCATGG
GCTTGCAGTATTAATCGAAAAAGGCGGCAAGGTATTGCTTTATGACACAGGGAAAGGATGGGGGAGCGGTAGCATTGCTG
AGCAGGTTATCACCCCGACTTTGCATCGTCGAGGTTACGATTCCATCGATGGGTTCATCATTAGCCATGCGGACTCTGAC
CATGCAGGAGGTCGTCAATACATCGAAAGTGCTTTCAATCCGACCAATAAGTTCAGCAGCCAGAATTATACTGACTACAA
AGCGTGCGTTGCAGGGGAGTACTGGTCATGGCAATCCTTGAATATGGAAGTGTTGTGGCCACCGAAGTTGGTTCAGCGTG
CCTACAATCCCCACTCTTGTGTGATTAGGGTAGTCGACTCTCAATCTGGTTTCCGTCTGCTGCTGACGGGAGATATTGAA
GCCATAAGTGAATGGATACTCATGCGTGAGCCTGAGAAACTAGAAAGTGATGTGATGTTGGTTCCTCACCATGGCAGCAA
GAGTTCTTCGAACCCCAAATTTGTTCAAGCCGTTTCCCCCAAATTAGCCATTGCTTCTCTCGCAAAAAGTAATCAATGGG
GGATGCCTGCTGAAAATGTTGTATCAGCTTATGAAGAGAGCAAGGCGCTTTGGTTAGACACAGGCAGTGATGGTCAAGTA
TCGGTGTTTATTGAGCAAGACAATTGGCACTTCGAAGTTAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAAGGGAGTAGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-465)

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A2NEC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

74.069

100

0.741
  comEC Vibrio parahaemolyticus RIMD 2210633

65.559

100

0.656
  comEC Vibrio cholerae strain A1552

42.706

100

0.428

Multiple sequence alignment