Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV401_RS09025 Genome accession   NZ_CP031254
Coordinates   1779663..1781702 (+) Length   679 a.a.
NCBI ID   WP_071163269.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M25588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1774663..1786702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS08995 ettA 1774817..1776487 (-) 1671 WP_005650218.1 energy-dependent translational throttle protein EttA -
  DV401_RS09000 - 1776571..1776834 (-) 264 WP_071163272.1 type II toxin-antitoxin system YafQ family toxin -
  DV401_RS09005 - 1776831..1777106 (-) 276 WP_071163271.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  DV401_RS09010 zevA 1777457..1778077 (+) 621 WP_005650213.1 zinc transporter binding subunit ZevA -
  DV401_RS09015 zevB 1778080..1779048 (+) 969 WP_071163270.1 zinc transporter permease subunit ZevB -
  DV401_RS09025 uvrB 1779663..1781702 (+) 2040 WP_071163269.1 excinuclease ABC subunit UvrB Machinery gene
  DV401_RS09030 - 1781733..1783658 (-) 1926 WP_071163268.1 LTA synthase family protein -
  DV401_RS09035 - 1783882..1786152 (-) 2271 WP_005650195.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77512.98 Da        Isoelectric Point: 5.0392

>NTDB_id=263763 DV401_RS09025 WP_071163269.1 1779663..1781702(+) (uvrB) [Haemophilus influenzae strain M25588]
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFHVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGCEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEATALYNAPKNAKEYQQ
QIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFDN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=263763 DV401_RS09025 WP_071163269.1 1779663..1781702(+) (uvrB) [Haemophilus influenzae strain M25588]
ATGTCTGAAAAAATCAACACAAAACCATTCATTCTGCATTCCGACTTTCGTCCCTCTGGCGATCAGCCACAAGCTATCGA
AAAATTGGCTGAAAATTTAACGGATGGTTTGGCGCATCAAACTTTACTCGGGGTAACTGGCTCGGGGAAGACGTTTACTA
TCGCCAATGTAATCGCTCAATTAAATCGCCCCGCGATGTTACTTGCACCGAATAAAACCCTTGCTGCTCAGCTTTATGCA
GAAATGAAAGCTTTTTTTCCAGAAAATGCGGTGGAATATTTTGTGTCTTACTATGATTATTATCAGCCAGAAGCCTATGT
GCCGAGCAGTGATACATTTATTGAAAAAGATGCGTCTATTAATGATCAAATTGAACAAATGCGACTTTCTGCGACGAAAT
CTTTTCTAGAACGTCGAGATACCATCGTGGTGGCTTCTGTTTCTGCAATTTATGGTTTGGGCGATCCTGATAGCTATTTA
CAAATGATGTTGCATTTACAACAAGGTGCCATTATCGATCAACGCCAAATTTTAGCGAAATTAGCGGAATTACAATATAC
CCGAAATGATCAAGCATTTCAGCGTGGAACTTTCCATGTTCGCGGAGAAATTATTGATATTTTCCCTGCGGAATCTGATG
ATCGTGCGGTGCGTATTGAATTATTTGATGATGAAATCGAGCGTTTAAGTTTATTTGATCCGCTCACTGGTAGTAGTTTT
GGTGCTGTACCACGTTTTACGATCTATCCTAAAACTCACTATGTGACACCAAGAGAACGTATTTTAGATGCGATAGAAAA
CATCAAAAAAGAACTGGTATCACGCCGTGAATACTTCATTAAAGAACATAAACTTTTAGAAGAACAGCGTATCAGCCAAC
GAACCCAATTTGATATTGAAATGATGAATGAATTGGGCTATTGCTCGGGAATTGAAAACTACTCTCGCTATTTATCGGGC
AGAAATGAGGGCGAACCACCACCAACATTATTTGATTATATGCCCTCTGATGCGATTTTAATTATTGATGAATCTCATGT
AACTGTGCCTCAAATTGGCGGGATGTATCGTGGCGACCGTTCACGTAAAGAAACCTTAGTCGAATATGGTTTCCGTTTGC
CGTCCGCATTGGATAATCGTCCGTTACGCTTTGAGGAATTTGAACGCTTAGCCCCGCAAACCATTTATGTTTCCGCAACA
CCAGGGCCTTATGAATTAGAGAAATCAGGCTGTGAAATCATCGATCAAGTGGTTCGCCCCACTGGTTTACTTGATCCGCT
TATTGAAATTCGTCCAGTGTCAATTCAAGTGGATGATTTACTTTCCGAAGCTCGCCAAAGAGCGGATAAAAATGAACGCG
TTTTAGTGACGACGCTAACGAAGAAAATGGCTGAAGATTTAACGGATTATTTAGATGAACACGGGATTCGTGTGCGTTAT
CTACATTCTGATATTGATACCGTGGAACGCGTCGAAATTATCCGTGATTTGCGTTTAGGCGAATTTGATGTATTGGTTGG
AATTAACTTATTACGTGAAGGTTTAGATATTCCAGAAGTGTCTCTTGTGGCGATTTTAGATGCAGACAAAGAGGGCTTTT
TGCGCTCCGAACGTTCTTTAATTCAAACCATCGGTCGTGCTGCGCGAAACTTAAATGGTAAAGCGATTTTGTATGCAGAT
AGCATCACAAAATCCATGGAAAAAGCCATCACCGAAACCAATCGTCGTCGTGAAAAACAAACAAAATACAATGAAGAACA
TGGCATTGTGCCACAGGCATTAAATAAGAAAGTCGGTGAATTATTAGATATTGGGCAAGGTGCAAACCAAAAAGCGAAAG
CCAATAAACAACGTGGAAAAATGGCGGCAGAAGCAACCGCACTTTATAATGCACCGAAAAATGCCAAAGAATATCAACAA
CAAATCAAAAAATTGGAACAACAAATGTATAAATTTGCGCAAGATTTGGAATTTGAAAAAGCCGCGGCTATTCGCGATCA
ATTACATCAATTGCGTGAACAATTTGTTTTTGATAACTAA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(164-254)

Type III restriction enzyme, res subunit (ResIII)

(20-102)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(640-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae R6

57.292

98.969

0.567
  uvrB Streptococcus pneumoniae D39

57.292

98.969

0.567