Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C1H71_RS10370 Genome accession   NZ_CP025781
Coordinates   2305393..2306739 (+) Length   448 a.a.
NCBI ID   WP_130106495.1    Uniprot ID   A0A7G3GA33
Organism   Iodobacter fluviatilis strain PCH194     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2300393..2311739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H71_RS10345 (C1H71_10465) - 2300705..2301106 (+) 402 WP_223145842.1 OsmC family protein -
  C1H71_RS10350 (C1H71_10470) ttcA 2301318..2302250 (+) 933 WP_130106491.1 tRNA 2-thiocytidine(32) synthetase TtcA -
  C1H71_RS10355 (C1H71_10475) - 2302250..2303032 (+) 783 WP_130106492.1 fused MFS/spermidine synthase -
  C1H71_RS10360 (C1H71_10480) - 2303131..2303646 (+) 516 WP_130106493.1 RNA pyrophosphohydrolase -
  C1H71_RS10365 (C1H71_10485) - 2303710..2305311 (+) 1602 WP_130106494.1 nitrogen regulation protein NR(II) -
  C1H71_RS10370 (C1H71_10490) pilR 2305393..2306739 (+) 1347 WP_130106495.1 sigma-54 dependent transcriptional regulator Regulator
  C1H71_RS10375 (C1H71_10495) ampD 2306739..2307317 (+) 579 WP_130106496.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  C1H71_RS10380 (C1H71_10500) - 2307349..2309244 (+) 1896 WP_130106497.1 potassium transporter Kup -
  C1H71_RS10385 (C1H71_10505) - 2309313..2309909 (-) 597 WP_130106498.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49174.27 Da        Isoelectric Point: 5.8547

>NTDB_id=263749 C1H71_RS10370 WP_130106495.1 2305393..2306739(+) (pilR) [Iodobacter fluviatilis strain PCH194]
MARKSSKNSKRVLVVDDERDLAELLELTLLKMGLDVDCAYGVKEACSKLDQGIYELCLTDMRMPDGEGLEIIRHIQNKGL
DVPVAVITAYGSTDNAVAALKAGAFDYLAKPVALDQLRALVKSALALDDAPIHLQQDRPLLGESTAIQHALELIAKLAKS
QAPVYVTGESGSGKERAARLIHASSSRANHPFVAVNCGAIPENLMESEFFGHKKGAFTGANEDRDGFFHAANSGTLFLDE
VADLPLAMQVKLLRVIQERTVRKLGATAEDALDVRIISATHQSLSQCVEAGRFRQDLYYRLNVIELRMPALREMGSDVLV
IARHVLARLAKLNGQSLPDFSSDALTALQRYDFPGNVRELENVLERALALADGHAITAADLQLSPSDEAVAESDLGDKYP
LQDYMDRVEKQAILEALEKTRFNRTQAAKILGLTFRSLRYRLDRLGIQ

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=263749 C1H71_RS10370 WP_130106495.1 2305393..2306739(+) (pilR) [Iodobacter fluviatilis strain PCH194]
ATGGCAAGGAAGTCGAGTAAAAATAGTAAGCGCGTGTTGGTTGTGGATGATGAACGTGATCTGGCTGAGTTGCTTGAATT
AACCCTGCTCAAAATGGGTTTAGATGTTGATTGTGCCTACGGGGTAAAAGAGGCGTGCAGCAAGCTAGATCAGGGCATTT
ATGAGCTATGCCTAACTGATATGCGTATGCCCGATGGCGAGGGTTTAGAGATTATTCGGCATATCCAAAATAAAGGCTTG
GATGTGCCCGTGGCGGTGATTACCGCCTATGGCAGCACCGATAACGCCGTGGCGGCGTTAAAAGCAGGCGCGTTTGATTA
TCTGGCCAAGCCCGTGGCGCTGGATCAGCTGCGGGCTTTGGTTAAATCTGCGCTAGCGCTAGACGATGCGCCTATTCATC
TTCAACAAGACCGGCCCTTGCTGGGCGAATCTACCGCGATTCAACACGCTTTAGAGCTCATCGCAAAATTGGCGAAAAGC
CAAGCGCCGGTGTATGTCACGGGTGAATCTGGCTCTGGAAAAGAGCGTGCCGCTCGTTTGATTCACGCCAGCTCTAGCCG
TGCTAATCATCCCTTTGTGGCAGTGAACTGCGGAGCCATCCCAGAAAACCTGATGGAAAGCGAGTTTTTTGGGCATAAAA
AAGGCGCATTTACTGGCGCAAACGAAGACCGAGATGGCTTTTTTCATGCCGCCAATAGCGGCACCTTGTTTTTGGATGAA
GTAGCGGATCTGCCGTTGGCGATGCAAGTCAAGCTATTGCGGGTTATTCAAGAGCGCACAGTGCGCAAATTAGGTGCAAC
CGCAGAAGACGCCTTAGATGTGCGGATTATCTCTGCCACGCACCAAAGCCTAAGCCAATGCGTGGAGGCGGGGCGTTTTA
GGCAGGATTTATACTACCGGCTGAATGTGATTGAGCTGCGCATGCCCGCTTTAAGGGAAATGGGCAGCGATGTGCTAGTG
ATTGCTCGCCATGTGTTGGCTAGGCTGGCGAAGCTTAATGGCCAAAGTTTGCCTGATTTTTCCAGTGATGCGCTAACCGC
ACTGCAGCGCTATGATTTCCCAGGCAATGTACGTGAGCTGGAAAACGTCTTGGAGCGTGCGCTTGCCTTGGCAGATGGCC
ATGCAATTACTGCCGCAGATTTGCAGCTAAGCCCCAGCGATGAGGCCGTGGCGGAGAGCGATTTAGGCGATAAATACCCG
CTGCAAGATTATATGGATAGGGTAGAGAAGCAGGCTATTTTGGAGGCCTTAGAAAAAACGCGCTTTAATCGGACTCAGGC
GGCTAAGATTCTAGGGCTGACTTTCCGCAGCCTGCGCTATCGGCTTGATCGTTTAGGAATTCAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(12-121)

Bacterial regulatory protein, Fis family (HTH_8)

(406-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G3GA33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.152

99.777

0.56
  pilR Acinetobacter baumannii strain A118

46.087

100

0.473
  luxO Vibrio cholerae strain A1552

37.978

99.33

0.377

Multiple sequence alignment