Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV446_RS05810 Genome accession   NZ_CP031252
Coordinates   1123950..1125977 (-) Length   675 a.a.
NCBI ID   WP_074897044.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1118950..1130977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS12130 - 1119213..1120130 (-) 918 Protein_1107 hemagglutinin repeat-containing protein -
  DV446_RS12515 - 1120090..1120308 (-) 219 WP_240317924.1 hypothetical protein -
  DV446_RS12320 - 1120275..1120592 (-) 318 WP_074897038.1 Hint domain-containing protein -
  DV446_RS05790 - 1121250..1122641 (+) 1392 WP_074897040.1 3'-5' exonuclease -
  DV446_RS05795 - 1122811..1123302 (-) 492 WP_074897042.1 REP-associated tyrosine transposase -
  DV446_RS05805 - 1123430..1123912 (-) 483 WP_003710116.1 hypothetical protein -
  DV446_RS05810 uvrB 1123950..1125977 (-) 2028 WP_074897044.1 excinuclease ABC subunit UvrB Machinery gene
  DV446_RS05815 purD 1126160..1127428 (-) 1269 WP_074897046.1 phosphoribosylamine--glycine ligase -
  DV446_RS05820 - 1127722..1129218 (-) 1497 WP_074897048.1 HsdM family class I SAM-dependent methyltransferase -
  DV446_RS12135 - 1129215..1129520 (-) 306 WP_143095759.1 hypothetical protein -
  DV446_RS05825 - 1129468..1130190 (-) 723 WP_083426670.1 restriction endonuclease subunit S -
  DV446_RS05830 - 1130151..1130369 (-) 219 WP_074897052.1 hypothetical protein -

Sequence

Protein


Download         Length: 675 a.a.        Molecular weight: 76818.32 Da        Isoelectric Point: 5.0030

>NTDB_id=263668 DV446_RS05810 WP_074897044.1 1123950..1125977(-) (uvrB) [Neisseria elongata strain M15911]
MEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKEGLLFGAE

Nucleotide


Download         Length: 2028 bp        

>NTDB_id=263668 DV446_RS05810 WP_074897044.1 1123950..1125977(-) (uvrB) [Neisseria elongata strain M15911]
ATGGAAGTCATCCAATACCCAAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCCGGCGACCAGCCTACCGCCAT
TGCCGGCCTGCTCGAAGGGCTTTCAGACGGCCTGGCCTATCAAACCCTGCTCGGCGTAACCGGTTCGGGCAAAACCTACA
CCATGGCAAACGTCATTGCGCAAAGCGGCCGCCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTCTAC
GCCGAAATGCGCGAGTTTTTCCCCGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAGCCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAAGACAGCGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGATGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATTGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGACTTCAAACGCGGCAGCTTCCGCGTGCGCGGTGACGTGATTGACGTGTACCCCGCCGAAAGCT
CCGAAAATGCCCTGCGCATCAGCCTGTTTGACGACGAAATCGACCGTCTCGATATGTTCGACCCGCTTTCAGGCAGCCTG
CACCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGATACCGTCTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAAC
AGCGCACCCGTTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCCTCGCGCAAACAAAACCTCGTGGATTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATTCAAAAAGGCGAACGCG
TGCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAT
CTGCACAGCGACATCGACACCGTCGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGACTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCTTGGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGTTTCC
TGCGCTCTCACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAC
AAAATCACCGACTCCATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTTAACGAAGAACA
CGGCATCGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACAGCGGCAAAG
GCCGTCTGAAAGGCAAAAACAAGGTTAAAGTCGGCGAAATCCACAATGAAGAAGACGCAATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCGGCTAGGGATTTGCAGTTTGAAGAAGCGGCGGTGTTGAGGGATAGGATTCGGGGGATTAA
GGAAGGGTTGTTGTTTGGGGCGGAGTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB interaction domain (UvrB_inter)

(165-255)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(635-668)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.354

98.222

0.544
  uvrB Streptococcus pneumoniae R6

55.354

98.222

0.544
  uvrB Streptococcus pneumoniae D39

55.354

98.222

0.544

Multiple sequence alignment