Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV446_RS03935 Genome accession   NZ_CP031252
Coordinates   758307..758636 (-) Length   109 a.a.
NCBI ID   WP_074898583.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753307..763636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS03905 - 753381..754883 (+) 1503 WP_205277215.1 terminase large subunit domain-containing protein -
  DV446_RS03915 - 755161..756030 (+) 870 WP_114910513.1 phage minor head protein -
  DV446_RS03920 - 756033..756476 (+) 444 WP_074897625.1 phage virion morphogenesis protein -
  DV446_RS03925 - 756622..756759 (+) 138 Protein_752 IS1595 family transposase -
  DV446_RS03930 - 756950..757428 (+) 479 Protein_753 hypothetical protein -
  DV446_RS03935 comE 758307..758636 (-) 330 WP_074898583.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11111.03 Da        Isoelectric Point: 10.5237

>NTDB_id=263656 DV446_RS03935 WP_074898583.1 758307..758636(-) (comE) [Neisseria elongata strain M15911]
MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGHFKSVEDLKKVKGIGEGIFGKLKDEAT
VGTAAPAKTAKPAAVKPAAQPAAGKNAAK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=263656 DV446_RS03935 WP_074898583.1 758307..758636(-) (comE) [Neisseria elongata strain M15911]
ATGAAAAAGGCTTTGTTCGGTTTGTTGTCTTATGCGGTTACGGCTTTGGCTTTGGCGGCCGTCAATATCAATACGGCCAC
GGTTGAGGAGTTGAAGGCTTTGCCCGGGATCGGTCCGGCAAAGGCTCAGGCAATTGTGGATTACCGCAAGGAAAACGGTC
ATTTCAAATCGGTGGAGGATTTGAAGAAGGTGAAGGGTATCGGTGAGGGTATCTTCGGTAAGTTGAAGGATGAGGCAACG
GTCGGTACTGCTGCGCCGGCTAAAACGGCCAAACCCGCAGCAGTGAAACCTGCCGCTCAACCCGCAGCAGGGAAAAATGC
GGCTAAGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  comE Neisseria gonorrhoeae MS11

58.696

84.404

0.495
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.259

74.312

0.44

Multiple sequence alignment