Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   SSA_RS09310 Genome accession   NC_009009
Coordinates   1898323..1899369 (-) Length   348 a.a.
NCBI ID   WP_002918065.1    Uniprot ID   A3CQ25
Organism   Streptococcus sanguinis SK36     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1893323..1904369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09280 (SSA_1897) - 1894244..1894540 (-) 297 WP_011837435.1 YlxQ-related RNA-binding protein -
  SSA_RS09285 (SSA_1899) rnpM 1894533..1894829 (-) 297 WP_011837436.1 RNase P modulator RnpM -
  SSA_RS09290 (SSA_1900) nusA 1894840..1896096 (-) 1257 WP_164926002.1 transcription termination factor NusA -
  SSA_RS09295 (SSA_1901) rimP 1896156..1896644 (-) 489 WP_032908080.1 ribosome maturation factor RimP -
  SSA_RS09300 (SSA_1902) trmB 1896843..1897481 (-) 639 WP_002893561.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SSA_RS09305 (SSA_1903) ccrZ 1897478..1898272 (-) 795 WP_011837438.1 cell cycle regulator CcrZ -
  SSA_RS09310 (SSA_1904) pptB 1898323..1899369 (-) 1047 WP_002918065.1 ABC transporter permease Regulator
  SSA_RS09315 (SSA_1905) pptA 1899366..1900097 (-) 732 WP_023916835.1 ABC transporter ATP-binding protein Regulator
  SSA_RS09320 (SSA_1906) - 1900166..1900576 (+) 411 WP_002918069.1 HIT family protein -
  SSA_RS09325 (SSA_1907) - 1900586..1900873 (+) 288 WP_002896907.1 hypothetical protein -
  SSA_RS09330 (SSA_1909) brpA 1900994..1902232 (-) 1239 WP_002927574.1 biofilm formation/cell division transcriptional regulator BrpA -
  SSA_RS09335 (SSA_1910) - 1902241..1902762 (-) 522 WP_002918072.1 GNAT family N-acetyltransferase -
  SSA_RS09340 (SSA_1911) tsaE 1902755..1903195 (-) 441 WP_002918074.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40199.27 Da        Isoelectric Point: 10.3483

>NTDB_id=26325 SSA_RS09310 WP_002918065.1 1898323..1899369(-) (pptB) [Streptococcus sanguinis SK36]
MKELFAKRKQDFRQQCLKYLRYVFNDHFVLFLLIFMGFLGVQYSQLLRHFPTNHLPIIASLVILSLFILPFGRIATYLEK
PDALFLLVREAEVRAFIKAQILRSYLLYAVLQTGILLLLAPLFLALGLPVWGFGLYCLLMLVLKWFLFQAKAKKFFTENG
LDWQSLVACEAARKQTILRFFALFTNVKGISNSVKRRAYLDGLTRLMGKQHSKIWQNLFLRSYLRNGDFFALTLRLLFLA
LLALIFVSQAWIAAAFAVLFNYLLLFQLTALYEAFDYQFLTQLFPIEGEEKLKGARQIITSIGSSVLLAEVLTALIFFQD
KTAVLAMLGATALLYLFYLPFKLRRLVD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=26325 SSA_RS09310 WP_002918065.1 1898323..1899369(-) (pptB) [Streptococcus sanguinis SK36]
ATGAAAGAATTATTTGCCAAACGAAAGCAGGATTTTCGTCAGCAATGTTTGAAATACCTGCGTTATGTTTTTAATGATCA
TTTCGTGCTCTTTCTTCTGATTTTTATGGGATTTTTAGGTGTTCAGTACAGTCAGCTTTTGCGGCATTTCCCGACCAATC
ACCTCCCGATTATTGCCAGTCTAGTTATTCTATCGCTCTTTATCCTGCCTTTTGGACGGATTGCGACCTATCTGGAAAAG
CCGGATGCTCTCTTTCTCTTGGTCAGAGAAGCAGAAGTCAGGGCTTTTATCAAGGCTCAGATTCTGCGTTCCTATCTCTT
GTACGCAGTCTTACAGACTGGAATCTTACTGTTACTGGCTCCGCTTTTTCTGGCTCTGGGATTGCCTGTTTGGGGCTTTG
GGCTTTACTGCCTCCTTATGCTAGTCTTGAAATGGTTTTTGTTTCAGGCTAAGGCCAAGAAGTTCTTTACTGAAAATGGC
CTAGATTGGCAGTCTCTGGTGGCTTGTGAAGCAGCCCGAAAGCAGACGATTCTCCGTTTCTTTGCTCTCTTTACAAATGT
TAAAGGCATTTCAAACAGTGTCAAGCGCCGGGCCTATCTAGATGGTTTGACAAGGCTTATGGGCAAGCAGCATAGCAAGA
TCTGGCAGAATCTCTTTTTGCGTTCTTACTTGCGAAATGGAGACTTCTTTGCTCTAACCTTAAGACTGCTCTTTCTAGCT
CTTTTGGCCTTGATTTTTGTCAGTCAAGCTTGGATTGCTGCGGCTTTTGCGGTCTTGTTCAATTACCTCTTGCTCTTCCA
GCTGACGGCCTTGTATGAAGCTTTTGACTATCAGTTTTTGACCCAGCTTTTTCCGATAGAAGGAGAGGAAAAGCTGAAGG
GAGCAAGACAAATTATCACATCTATTGGCAGCAGTGTTCTCTTGGCTGAAGTGCTGACTGCTCTGATCTTTTTCCAAGAC
AAGACAGCAGTGCTGGCCATGCTGGGAGCAACTGCCCTACTCTATCTGTTCTATCTGCCGTTTAAGTTACGGAGATTGGT
TGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A3CQ25

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.989

100

0.48

  pptB Streptococcus salivarius strain HSISS4

47.414

100

0.474


Multiple sequence alignment