Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   DV131_RS05595 Genome accession   NZ_CP031246
Coordinates   1027118..1028167 (+) Length   349 a.a.
NCBI ID   WP_050213819.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M26368     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1022118..1033167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV131_RS11295 - 1022953..1023586 (+) 634 Protein_1008 DJ-1/PfpI family protein -
  DV131_RS05570 dnaJ 1023756..1024892 (+) 1137 WP_001066288.1 molecular chaperone DnaJ -
  DV131_RS11300 - 1025214..1025453 (-) 240 WP_001813906.1 hypothetical protein -
  DV131_RS05580 - 1025615..1025902 (-) 288 WP_000777760.1 hypothetical protein -
  DV131_RS05585 - 1025912..1026322 (-) 411 WP_001278301.1 HIT family protein -
  DV131_RS05590 pptA 1026390..1027121 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  DV131_RS05595 pptB 1027118..1028167 (+) 1050 WP_050213819.1 ABC transporter permease Regulator
  DV131_RS05600 - 1028335..1028664 (-) 330 WP_000132572.1 hypothetical protein -
  DV131_RS05605 - 1028942..1029280 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  DV131_RS05610 comE/blpR 1029285..1030022 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  DV131_RS05615 comD/blpH 1030036..1031376 (+) 1341 WP_050213946.1 sensor histidine kinase Regulator
  DV131_RS05620 blpC 1031418..1031573 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -
  DV131_RS05625 - 1031630..1032991 (-) 1362 WP_050213945.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40600.67 Da        Isoelectric Point: 10.0008

>NTDB_id=263158 DV131_RS05595 WP_050213819.1 1027118..1028167(+) (pptB) [Streptococcus pneumoniae strain M26368]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKTSKFFTETG
LDWDYLISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=263158 DV131_RS05595 WP_050213819.1 1027118..1028167(+) (pptB) [Streptococcus pneumoniae strain M26368]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTCTATGTGCTTTTATTGGGGGTAGGAAAGTATTTCCACTTTCGTCAAAAGACCAGCAAATTTTTCACTGAAACTGGA
CTGGACTGGGACTATCTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGTGTCAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGATAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.429

100

0.476

  pptB Streptococcus thermophilus LMD-9

46.571

100

0.467