Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C0058_RS02070 Genome accession   NZ_CP025624
Coordinates   442208..443545 (+) Length   445 a.a.
NCBI ID   WP_102367943.1    Uniprot ID   -
Organism   Pseudomonas sp. NC02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 437208..448545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0058_RS02050 (C0058_02050) - 437235..439691 (-) 2457 WP_371316571.1 penicillin-binding protein 1A -
  C0058_RS02055 (C0058_02055) pilM 439912..440565 (+) 654 WP_023659347.1 type IV pilus biogenesis protein PilM -
  C0058_RS02060 (C0058_02060) - 440565..441116 (+) 552 WP_102367941.1 PilN domain-containing protein -
  C0058_RS02065 (C0058_02065) - 441113..442138 (+) 1026 WP_102367942.1 pilus assembly protein PilP -
  C0058_RS02070 (C0058_02070) pilQ 442208..443545 (+) 1338 WP_102367943.1 type IV pilus secretin PilQ Machinery gene
  C0058_RS02075 (C0058_02075) aroK 443550..444068 (+) 519 WP_003209345.1 shikimate kinase AroK -
  C0058_RS02080 (C0058_02080) aroB 444216..445316 (+) 1101 WP_102367944.1 3-dehydroquinate synthase -
  C0058_RS02085 (C0058_02085) - 445327..446886 (+) 1560 WP_003209350.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48474.54 Da        Isoelectric Point: 4.8200

>NTDB_id=263130 C0058_RS02070 WP_102367943.1 442208..443545(+) (pilQ) [Pseudomonas sp. NC02]
MVMAVPNRIDLIHLPPPGNAPLSTGRVAFTGDKLSLNFQNIELRAVLQQIADVAGLNLVTSDDVQGSITLRLKDVPWDQA
LDLVLQTKGLDKRVTANVLLVAPAEELAARELLAMESRKQMTELAPLRRELLQVNYAKASDLAKLFQSAVGLEGATDERG
SVAVDDRTNNIIAYQTRERLEELRTIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGQLNRGNWSAGGIRKPLAEGA
EPPETPPSSPFVDLGAVNGSAGLGVAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSTG
ATSVSFKEASLSLEVTPQITPDGWVIMEVKVTKDEPDYLNRLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVD
KVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=263130 C0058_RS02070 WP_102367943.1 442208..443545(+) (pilQ) [Pseudomonas sp. NC02]
ATGGTCATGGCTGTGCCCAATCGAATCGACTTGATTCACCTGCCGCCACCTGGCAATGCGCCCCTGAGTACCGGACGCGT
GGCATTCACCGGGGACAAGCTGTCCCTCAACTTCCAGAACATCGAGTTGCGCGCGGTGCTGCAGCAGATTGCTGACGTTG
CCGGCCTCAATCTGGTGACCAGTGACGACGTGCAGGGTTCGATCACCCTGCGCCTCAAGGACGTGCCCTGGGACCAGGCC
CTGGACCTGGTGTTGCAAACCAAGGGGCTGGACAAGCGTGTGACGGCCAATGTGCTGCTGGTCGCGCCGGCCGAGGAGTT
GGCCGCCCGCGAGTTGCTGGCGATGGAGTCGCGCAAGCAAATGACTGAGTTGGCACCGCTGCGCCGCGAGTTGCTGCAAG
TCAATTACGCCAAGGCGTCGGACCTGGCCAAGCTCTTCCAGTCGGCCGTGGGCCTGGAAGGTGCAACCGATGAGCGCGGC
TCGGTGGCGGTGGATGACCGCACCAACAACATCATCGCCTACCAGACCCGGGAGCGGCTGGAGGAGCTGCGCACGATTGT
GGCGCAACTGGATATTCCGGTAAGGCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAATGTGGATTACGACAAAAGCC
TTGGCGTGCGCTGGGGCGGGCAACTGAATCGGGGTAACTGGAGCGCTGGCGGGATCAGGAAACCGCTGGCCGAAGGCGCC
GAGCCGCCTGAAACCCCGCCCAGCTCGCCGTTTGTGGACCTGGGGGCGGTCAACGGCAGCGCCGGCCTGGGTGTCGCGTT
TATCACCGACAACCTGCTGCTGGACCTGGAACTGACCGCCATGGAAAAAACCGGCAATGGTGAAATCGTTTCGCAGCCCA
AGGTCGTCACCTCCGACAAGGAAACCGCGCGAATCCTCAAGGGCACCGAGATTCCCTATCAGGAGTCCAGCTCCACCGGC
GCGACCTCGGTGTCGTTCAAGGAGGCCTCCTTGTCATTGGAAGTGACCCCGCAAATCACCCCGGACGGCTGGGTGATCAT
GGAGGTCAAGGTCACCAAGGATGAGCCCGACTACCTGAACAGGCTCAACGATGTGCCGCCGATCAAGAAAAACGAGGTCA
ATGCCAAGGTGCTGGTCAAGGACGGGGAGACCATCGTGATCGGCGGGGTTTTCTCCAATACTCAAAGCAAAGTGGTAGAT
AAAGTGCCATTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGGGATGTGGTTTCGGAGAAAAAATCCGAGCT
GCTGGTATTCCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(280-436)

Secretin and TonB N terminus short domain (STN)

(58-103)

Bacterial type II/III secretion system short domain (Secretin_N)

(131-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.167

98.202

0.699
  pilQ Acinetobacter baumannii D1279779

42.026

100

0.438
  pilQ Acinetobacter baumannii strain A118

42.026

100

0.438
  comQ Acinetobacter baylyi ADP1

43.333

100

0.438
  pilQ Vibrio campbellii strain DS40M4

45.154

95.056

0.429
  pilQ Legionella pneumophila strain ERS1305867

44.762

94.382

0.422
  pilQ Legionella pneumophila strain Lp02

44.762

94.382

0.422
  pilQ Vibrio cholerae strain A1552

44.737

93.933

0.42
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

44.737

93.933

0.42
  pilQ Neisseria meningitidis M1080

35.903

100

0.366
  pilQ Neisseria meningitidis MC58

35.903

100

0.366

Multiple sequence alignment