Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   C0119_RS09675 Genome accession   NZ_CP025618
Coordinates   1971927..1972631 (-) Length   234 a.a.
NCBI ID   WP_004894131.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1966927..1977631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS09665 (C0119_12640) clpB 1967866..1970445 (-) 2580 WP_008306562.1 ATP-dependent chaperone ClpB -
  C0119_RS09670 (C0119_12635) - 1970696..1971745 (-) 1050 WP_008306564.1 NADP(H)-dependent aldo-keto reductase -
  C0119_RS09675 (C0119_12630) crp 1971927..1972631 (-) 705 WP_004894131.1 cAMP-activated global transcriptional regulator CRP Regulator
  C0119_RS09680 (C0119_12625) - 1972779..1973201 (+) 423 WP_008306567.1 OsmC family protein -
  C0119_RS09685 (C0119_12620) - 1973281..1974312 (-) 1032 WP_108675917.1 metallophosphoesterase -
  C0119_RS09690 (C0119_12615) - 1974620..1976857 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26296.92 Da        Isoelectric Point: 4.6679

>NTDB_id=263060 C0119_RS09675 WP_004894131.1 1971927..1972631(-) (crp) [Acinetobacter schindleri strain SGAir0122]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPAEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=263060 C0119_RS09675 WP_004894131.1 1971927..1972631(-) (crp) [Acinetobacter schindleri strain SGAir0122]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGACAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCATATTTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAACTGAGCAAACAATATCCTGACTTGAGTTATGCGGTCTTTGCCCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATCGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTGCCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCCCGTGAAATGGTCGGTCGCGTACTGAAAACCCTTGAAGAGCAAGGCATGATCGAAACGGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAGCAAAATGAAGTACCAGCTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.162

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406

Multiple sequence alignment