Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   C0119_RS01885 Genome accession   NZ_CP025618
Coordinates   401382..401810 (+) Length   142 a.a.
NCBI ID   WP_167456601.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain SGAir0122     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396382..406810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS01875 (C0119_05540) - 396859..400779 (+) 3921 WP_228256257.1 pilus assembly protein PilC -
  C0119_RS16205 (C0119_05535) - 400790..401382 (+) 593 Protein_359 type IV pilin protein -
  C0119_RS01885 (C0119_05530) comF 401382..401810 (+) 429 WP_167456601.1 type IV pilin protein Machinery gene
  C0119_RS01890 (C0119_05525) rpsP 401955..402212 (+) 258 WP_108675567.1 30S ribosomal protein S16 -
  C0119_RS01895 (C0119_05520) rimM 402240..402788 (+) 549 WP_108675566.1 ribosome maturation factor RimM -
  C0119_RS01900 (C0119_05515) trmD 402831..403571 (+) 741 WP_108675565.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C0119_RS01905 (C0119_05510) rplS 403778..404152 (+) 375 WP_100241899.1 50S ribosomal protein L19 -
  C0119_RS01910 (C0119_05505) - 404210..405178 (-) 969 WP_108675564.1 esterase/lipase family protein -
  C0119_RS01915 (C0119_05500) - 405329..405514 (-) 186 WP_008303086.1 hypothetical protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15690.83 Da        Isoelectric Point: 9.2182

>NTDB_id=263046 C0119_RS01885 WP_167456601.1 401382..401810(+) (comF) [Acinetobacter schindleri strain SGAir0122]
MKKYSLAFTLIELMIVVAIIGILAAIAYPSYTQYKIRTNRTDVQSEMMQQAQRLQSYYVINHNYTSATLDNGATTKDYPT
SNPVYSITLVPNGQTYTLTAEPKSGTVQMGNGSVVLDSQGRKCWTKTTTACVPSATSNWDGR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=263046 C0119_RS01885 WP_167456601.1 401382..401810(+) (comF) [Acinetobacter schindleri strain SGAir0122]
ATGAAAAAATACTCTTTAGCATTTACTTTAATTGAGTTAATGATTGTTGTCGCAATTATTGGCATCTTGGCAGCAATTGC
TTATCCATCTTACACACAGTACAAAATCCGTACCAATCGCACAGATGTACAAAGTGAAATGATGCAACAGGCACAACGTC
TACAGAGTTATTACGTTATCAACCATAACTATACCAGCGCAACACTGGATAATGGTGCAACTACAAAGGATTACCCAACA
TCTAATCCTGTTTATAGCATTACACTGGTCCCGAATGGTCAAACGTATACGTTAACTGCAGAACCTAAATCTGGTACTGT
TCAGATGGGTAATGGAAGTGTAGTTTTAGATAGTCAGGGAAGGAAGTGTTGGACTAAAACAACTACAGCTTGCGTTCCCT
CAGCCACCTCCAACTGGGACGGACGCTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.676

97.887

0.535
  pilE Acinetobacter baumannii D1279779

47.059

95.775

0.451
  pilA2 Legionella pneumophila str. Paris

43.443

85.915

0.373
  pilA2 Legionella pneumophila strain ERS1305867

43.443

85.915

0.373

Multiple sequence alignment