Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   C0119_RS01335 Genome accession   NZ_CP025618
Coordinates   283399..284964 (-) Length   521 a.a.
NCBI ID   WP_004810141.1    Uniprot ID   N8WJI3
Organism   Acinetobacter schindleri strain SGAir0122     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 278399..289964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0119_RS01320 (C0119_06095) gpmI 279186..280736 (+) 1551 WP_108675611.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  C0119_RS01325 (C0119_06090) - 280757..281929 (+) 1173 WP_004810144.1 S41 family peptidase -
  C0119_RS01330 (C0119_06085) pilR 281956..283374 (-) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  C0119_RS01335 (C0119_06080) pilS 283399..284964 (-) 1566 WP_004810141.1 two-component system sensor histidine kinase NtrB Regulator
  C0119_RS01340 (C0119_06075) - 285014..285649 (-) 636 WP_004810139.1 response regulator -
  C0119_RS01345 (C0119_06070) - 285873..286928 (+) 1056 WP_026056747.1 serine hydrolase -
  C0119_RS01350 (C0119_06065) thrC 286993..288132 (-) 1140 WP_004810136.1 threonine synthase -
  C0119_RS01355 (C0119_06060) - 288189..289493 (-) 1305 WP_004810134.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59302.62 Da        Isoelectric Point: 6.2925

>NTDB_id=263037 C0119_RS01335 WP_004810141.1 283399..284964(-) (pilS) [Acinetobacter schindleri strain SGAir0122]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTLSSVGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDAQKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=263037 C0119_RS01335 WP_004810141.1 283399..284964(-) (pilS) [Acinetobacter schindleri strain SGAir0122]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCCTTTCCTCTGTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAGACTGGTTATCTGGTTCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGTTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAAGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCAAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCTGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCTAATGATCTGTTACCTGGTTGTGAACAGGACCAACAGCA
GGTGTTGCATGGCATGATCAGCAAGCAGGCAACACGAATCAACCGGATTATTGAAGACACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGACATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTGGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGCTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAATTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WJI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.228

96.929

0.555

Multiple sequence alignment