Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DV390_RS03785 Genome accession   NZ_CP031242
Coordinates   772035..772700 (+) Length   221 a.a.
NCBI ID   WP_013526173.1    Uniprot ID   Q4QLV5
Organism   Haemophilus influenzae strain M21460     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 767035..777700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV390_RS03760 crp 768575..769249 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  DV390_RS03765 - 769234..769485 (-) 252 WP_005647999.1 YheU family protein -
  DV390_RS03770 slmA 769507..770163 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  DV390_RS03775 dut 770167..770622 (-) 456 WP_005631431.1 dUTP diphosphatase -
  DV390_RS03780 coaBC 770670..771872 (-) 1203 WP_011272308.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DV390_RS03785 radC 772035..772700 (+) 666 WP_013526173.1 RadC family protein Machinery gene
  DV390_RS03790 rpmB 772914..773150 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  DV390_RS03795 rpmG 773162..773332 (+) 171 WP_005613503.1 50S ribosomal protein L33 -
  DV390_RS03800 - 773679..775043 (+) 1365 WP_042594398.1 diaminobutyrate--2-oxoglutarate transaminase -
  DV390_RS03805 vapB2 775190..775423 (+) 234 WP_005648011.1 type II toxin-antitoxin system antitoxin VapB2 -
  DV390_RS03810 vapC 775423..775821 (+) 399 WP_005651560.1 type II toxin-antitoxin system tRNA(fMet)-specific endonuclease VapC -
  DV390_RS03815 ddc 775841..777376 (+) 1536 WP_011272306.1 L-2,4-diaminobutyrate decarboxylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25057.34 Da        Isoelectric Point: 6.3797

>NTDB_id=262929 DV390_RS03785 WP_013526173.1 772035..772700(+) (radC) [Haemophilus influenzae strain M21460]
MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKDCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ
AITEMTKRYLKQEMLSTPIINDLETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY
CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide


Download         Length: 666 bp        

>NTDB_id=262929 DV390_RS03785 WP_013526173.1 772035..772700(+) (radC) [Haemophilus influenzae strain M21460]
ATGGAAAACAATGATGAATTAATGCCACGGGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT
TGCGATTTTTTTACGTACTGGTATCAAAGATTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT
TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA
GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGAGATGTTAAGTACGCCGATTATTAATGATCTTGAAACGGTAAA
ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA
TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT
TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAACTTATTAC
TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT
CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(102-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

97.738

100

0.977
  radC Streptococcus pneumoniae TIGR4

38.14

97.285

0.371
  radC Streptococcus pneumoniae R6

37.674

97.285

0.367
  radC Streptococcus pneumoniae D39

37.674

97.285

0.367