NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	DV384_RS08785	Genome accession	NZ_CP031241
Coordinates	1772474..1773139 (-)	Length	221 a.a.
NCBI ID	WP_013527272.1	Uniprot ID	A0ABY1VR37
Organism	Haemophilus influenzae strain M17648
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1767474..1778139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DV384_RS08755	ddc	1767798..1769333 (-)	1536	WP_114890557.1	L-2,4-diaminobutyrate decarboxylase	-
DV384_RS08760	vapC	1769353..1769751 (-)	399	WP_005651560.1	tRNA(fMet)-specific endonuclease VapC	-
DV384_RS08765	vapB2	1769751..1769984 (-)	234	WP_005648011.1	type II toxin-antitoxin system antitoxin VapB2	-
DV384_RS08770	-	1770131..1771495 (-)	1365	WP_114890556.1	diaminobutyrate--2-oxoglutarate transaminase	-
DV384_RS08775	rpmG	1771842..1772012 (-)	171	WP_005613503.1	50S ribosomal protein L33	-
DV384_RS08780	rpmB	1772024..1772260 (-)	237	WP_005542826.1	50S ribosomal protein L28	-
DV384_RS08785	radC	1772474..1773139 (-)	666	WP_013527272.1	DNA repair protein RadC	Machinery gene
DV384_RS08790	coaBC	1773303..1774505 (+)	1203	WP_114890555.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
DV384_RS08795	dut	1774553..1775008 (+)	456	WP_005631431.1	dUTP diphosphatase	-
DV384_RS08800	slmA	1775012..1775668 (+)	657	WP_005648000.1	nucleoid occlusion factor SlmA	-
DV384_RS08805	-	1775690..1775941 (+)	252	WP_005647999.1	YheU family protein	-
DV384_RS08810	crp	1775926..1776600 (+)	675	WP_110426323.1	cAMP-activated global transcriptional regulator CRP	Regulator

Sequence

Protein

Download Length: 221 a.a. Molecular weight: 24969.23 Da Isoelectric Point: 6.5991

                                >NTDB_id=262909 DV384_RS08785 WP_013527272.1 1772474..1773139(-) (radC) [Haemophilus influenzae strain M17648]

MENNDELMPREKLLAFGAKALSDYELLAIFLRTGIKGCPVMSLSKNVLTHFGSLHALLSADKKAFCSVKGLGITQFIQLQ

AITEMTKRYLKQDMLSTPIINDPETVKLFLLTELQHEEREVFMVLFLDNQHRLIKKERLFLGTINVSAVYPREIIKEALY

CNAAALILAHNHPSGITEPSYSDQLITKKIQDAAELMEIRVLDHLIVGKSDCYSFAENCLL

Nucleotide

Download Length: 666 bp

                                >NTDB_id=262909 DV384_RS08785 WP_013527272.1 1772474..1773139(-) (radC) [Haemophilus influenzae strain M17648]

ATGGAAAACAATGATGAATTAATGCCACGAGAAAAATTGCTGGCATTCGGAGCAAAAGCATTAAGTGATTATGAACTACT

TGCGATTTTTTTACGTACTGGTATCAAAGGTTGTCCTGTTATGTCACTTTCTAAAAATGTATTAACGCATTTTGGCTCCT

TGCACGCTTTACTTTCCGCAGATAAAAAAGCTTTCTGTTCTGTAAAAGGCTTAGGTATTACGCAATTTATTCAACTGCAA

GCGATTACGGAAATGACCAAGCGTTATTTAAAGCAAGATATGTTAAGTACGCCGATTATTAATGATCCTGAAACGGTAAA

ACTTTTTTTACTCACTGAATTGCAACACGAGGAAAGAGAAGTATTTATGGTTTTATTTTTAGATAATCAACATCGTTTGA

TTAAAAAAGAGCGGTTATTTTTAGGTACAATTAATGTATCAGCGGTTTATCCGCGAGAAATTATTAAAGAAGCACTCTAT

TGTAATGCGGCAGCTTTAATTTTGGCACATAATCATCCTTCAGGTATAACGGAGCCGAGTTATTCGGATCAGCTTATTAC

TAAAAAAATTCAAGATGCGGCTGAACTAATGGAAATTCGCGTGCTTGATCATTTAATTGTAGGGAAAAGCGATTGTTATT

CTTTCGCGGAGAATTGTTTATTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(100-218)

UPF0758 N-terminal (UPF0758_N)

(8-74)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	99.095	100	0.991
radC	Streptococcus pneumoniae TIGR4	37.674	97.285	0.367
radC	Streptococcus pneumoniae R6	37.209	97.285	0.362
radC	Streptococcus pneumoniae D39	37.209	97.285	0.362

Detailed information NTG0262909