Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV384_RS02955 Genome accession   NZ_CP031241
Coordinates   597829..599868 (+) Length   679 a.a.
NCBI ID   WP_114934488.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M17648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592829..604868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV384_RS02930 - 594659..594982 (-) 324 WP_005650217.1 HigA family addiction module antitoxin -
  DV384_RS02935 - 594993..595298 (-) 306 WP_005650215.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DV384_RS02940 zevA 595623..596243 (+) 621 WP_005650213.1 zinc transporter binding subunit ZevA -
  DV384_RS02945 zevB 596246..597214 (+) 969 WP_005650211.1 zinc transporter permease subunit ZevB -
  DV384_RS02955 uvrB 597829..599868 (+) 2040 WP_114934488.1 excinuclease ABC subunit UvrB Machinery gene
  DV384_RS02960 - 599899..601824 (-) 1926 WP_162816662.1 LTA synthase family protein -
  DV384_RS02965 - 602065..604335 (-) 2271 WP_054457044.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77712.26 Da        Isoelectric Point: 5.1489

>NTDB_id=262864 DV384_RS02955 WP_114934488.1 597829..599868(+) (uvrB) [Haemophilus influenzae strain M17648]
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSD
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGSEIIDQVVRPTGLLDPIIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHRIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQ
QIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFKN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=262864 DV384_RS02955 WP_114934488.1 597829..599868(+) (uvrB) [Haemophilus influenzae strain M17648]
ATGTCTGAAAAAATCAACACAAAACCGTTCATTCTGCATTCCGACTTTCGTCCTTCTGGCGATCAGCCACAAGCTATCGA
AAAATTAGCTGAAAATTTAACGGATGGTTTAGCACATCAAACTTTGCTCGGGGTAACAGGCTCGGGGAAGACGTTTACTA
TCGCCAACGTAATCGCTCAATTAAATCGCCCCGCAATGTTACTTGCACCGAATAAAACCCTTGCCGCTCAACTTTATGCA
GAAATGAAGGCCTTTTTTCCAGAAAATGCGGTGGAATATTTTGTGTCTTACTATGATTATTATCAGCCAGAAGCCTATGT
GCCTAGCAGTGATACTTTCATTGAAAAAGATGCTTCTATTAATGATCAAATCGAACAAATGCGACTTTCTGCGACAAAAT
CTTTTTTAGAACGTCGAGATACCATCGTAGTGGCTTCCGTTTCTGCAATTTATGGTTTGGGCGATCCTGATAGCTACTTA
CAAATGATGTTGCATTTACAACAAGGTGCCATTATCGATCAACGCCAAATTTTAGCGAAGTTAGCGGAATTGCAATATAC
CCGAAATGATCAAGCATTTCAGCGTGGAACTTTCCGTGTTCGTGGAGAAATTATTGATATTTTCCCAGCGGAATCCGATG
ATCGTGCAGTGCGTATTGAATTATTTGATGATGAAATTGAACGATTAAGTTTATTTGATCCGCTTACTGGCAGTAGTTTT
GGTGCAGTACCACGTTTTACGATCTATCCTAAAACTCACTATGTGACGCCAAGAGAACGTATTTTAGATGCGATAGAAAA
CATCAAAAAAGAACTGGTATCACGCCGTGAATACTTCATTAAAGAACATAAACTTTTAGAAGAACAGCGTATCAGCCAGC
GTACCCAATTTGATATTGAAATGATGAATGAATTAGGCTATTGCTCGGGTATTGAAAACTACTCTCGCTATTTGTCAGAT
AGAAATGAAGGCGAGCCACCACCAACATTGTTCGATTATATGCCCTCTGATGCTATTTTAATTATTGATGAATCTCATGT
GACCGTGCCTCAAATTGGTGGAATGTATCGTGGCGACCGTTCACGTAAAGAAACCTTAGTTGAATATGGTTTCCGTTTGC
CGTCCGCATTGGATAATCGTCCGTTACGCTTTGAGGAATTTGAACGCTTAGCTCCACAAACCATTTATGTTTCCGCAACA
CCAGGGCCTTATGAATTAGAGAAATCAGGTAGTGAAATCATCGATCAAGTGGTTCGCCCCACTGGTTTGCTTGACCCAAT
CATTGAAATTCGTCCAGTCTCAATTCAAGTGGATGATTTACTTTCCGAAGCTCGCCAAAGAGCGGATAAAAATGAGCGCG
TTTTAGTAACAACACTTACAAAAAAAATGGCAGAAGATTTAACGGATTATTTAGATGAACACAGAATTCGAGTGCGTTAT
TTGCATTCCGATATTGATACGGTGGAACGTGTCGAAATTATCCGTGATTTGCGTTTAGGCGAATTTGATGTATTGGTTGG
GATTAACTTATTGCGTGAAGGTTTAGATATTCCAGAAGTGTCTCTTGTGGCGATTTTAGATGCGGACAAAGAAGGATTTT
TACGCTCCGAACGCTCTTTAATCCAAACCATCGGCCGTGCTGCACGAAACTTAAATGGTAAAGCGATTTTATATGCGGAT
AGCATCACAAAATCAATGGAAAAAGCTATTACGGAAACTAATCGTCGTCGTGAAAAACAAACAAAATACAATGAAGAACA
CGGCATTGTGCCACAAGCATTAAATAAAAAAGTCGGAGAATTGTTAGATATTGGACAAGGTGCAAACCAAAAAGCGAAGG
CCAATAAACAACGTGGAAAAATGGCGGCAGAACCAACCGCACTTTATAATGCACCGAAAAATGCCAAAGAATATCAACAA
CAAATCAAAAAATTGGAACAACAAATGTATAAATTTGCACAAGATTTGGAATTTGAAAAAGCCGCGGCAATTCGCGATCA
ATTACATCAATTGCGTGAACAGTTTGTTTTTAAAAACTAA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB interaction domain (UvrB_inter)

(164-254)

UvrB/uvrC motif (UVR)

(640-674)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

Type III restriction enzyme, res subunit (ResIII)

(20-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.143

98.969

0.566
  uvrB Streptococcus pneumoniae R6

57.143

98.969

0.566
  uvrB Streptococcus pneumoniae D39

57.143

98.969

0.566