Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   DV369_RS05175 Genome accession   NZ_CP031239
Coordinates   1029801..1031840 (-) Length   679 a.a.
NCBI ID   WP_005628806.1    Uniprot ID   -
Organism   Haemophilus influenzae strain M13034     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024801..1036840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV369_RS05165 - 1025307..1027577 (+) 2271 WP_050948477.1 NADP-dependent malic enzyme -
  DV369_RS05170 - 1027845..1029770 (+) 1926 WP_050948781.1 LTA synthase family protein -
  DV369_RS05175 uvrB 1029801..1031840 (-) 2040 WP_005628806.1 excinuclease ABC subunit UvrB Machinery gene
  DV369_RS09510 - 1032648..1032869 (+) 222 WP_050948476.1 ESPR domain-containing protein -
  DV369_RS09515 - 1033095..1033289 (+) 195 WP_050948475.1 hypothetical protein -
  DV369_RS05190 zevB 1033465..1034439 (-) 975 WP_050948474.1 zinc transporter permease subunit ZevB -
  DV369_RS05195 zevA 1034442..1035062 (-) 621 WP_050846950.1 zinc transporter binding subunit ZevA -
  DV369_RS05200 - 1035414..1035689 (+) 276 WP_050948473.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  DV369_RS05205 - 1035686..1035949 (+) 264 WP_050948472.1 type II toxin-antitoxin system YafQ family toxin -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77556.03 Da        Isoelectric Point: 5.0426

>NTDB_id=262830 DV369_RS05175 WP_005628806.1 1029801..1031840(-) (uvrB) [Haemophilus influenzae strain M13034]
MSEKINTKPFILHSDFRPSGDQPQAIEKLAENLTDGLAHQTLLGVTGSGKTFTIANVIAQLNRPAMLLAPNKTLAAQLYA
EMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDQIEQMRLSATKSFLERRDTIVVASVSAIYGLGDPDSYL
QMMLHLQQGAIIDQRQILAKLAELQYTRNDQAFQRGTFRVRGEIIDIFPAESDDRAVRIELFDDEIERLSLFDPLTGSSF
GAVPRFTIYPKTHYVTPRERILDAIENIKKELVSRREYFIKEHKLLEEQRISQRTQFDIEMMNELGYCSGIENYSRYLSG
RNEGEPPPTLFDYMPSDAILIIDESHVTVPQIGGMYRGDRSRKETLVEYGFRLPSALDNRPLRFEEFERLAPQTIYVSAT
PGPYELEKSGSEIIDQVVRPTGLLDPLIEIRPVSIQVDDLLSEARQRADKNERVLVTTLTKKMAEDLTDYLDEHGIRVRY
LHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGKAILYAD
SITKSMEKAITETNRRREKQTKYNEEHGIVPQALNKKVGELLDIGQGANQKAKANKQRGKMAAEPTALYNAPKNAKEYQQ
QIKKLEQQMYKFAQDLEFEKAAAIRDQLHQLREQFVFEN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=262830 DV369_RS05175 WP_005628806.1 1029801..1031840(-) (uvrB) [Haemophilus influenzae strain M13034]
ATGTCTGAAAAAATCAACACAAAACCATTCATTCTTCATTCCGACTTTCGCCCCTCTGGCGATCAGCCACAAGCTATCGA
AAAATTGGCTGAAAATTTAACGGATGGATTGGCACATCAAACTTTGCTCGGAGTAACAGGCTCGGGGAAGACGTTTACTA
TCGCCAACGTAATCGCTCAATTAAATCGCCCCGCAATGTTACTTGCACCGAATAAAACCCTTGCCGCTCAACTTTATGCA
GAAATGAAAGCCTTTTTTCCAGAAAATGCGGTGGAATATTTTGTGTCTTACTATGATTATTATCAGCCAGAAGCCTATGT
GCCTAGCAGTGATACTTTCATTGAAAAAGATGCTTCTATTAATGATCAAATCGAACAAATGCGACTTTCTGCGACAAAAT
CTTTTTTAGAACGTCGAGATACCATCGTAGTGGCTTCCGTTTCTGCAATTTATGGTTTGGGCGATCCTGATAGCTACTTA
CAAATGATGTTGCATTTACAACAAGGTGCCATTATAGATCAACGCCAAATTTTAGCGAAGTTAGCGGAATTGCAATATAC
CCGCAATGATCAAGCATTTCAGCGTGGAACTTTCCGTGTTCGTGGGGAAATTATTGATATTTTCCCTGCAGAATCCGATG
ATCGTGCGGTGCGTATTGAATTATTTGATGATGAAATTGAACGATTAAGTTTATTTGATCCGCTCACTGGCAGTAGTTTT
GGTGCTGTTCCACGTTTTACGATCTATCCTAAAACGCACTATGTTACGCCAAGAGAACGCATTTTAGATGCGATAGAAAA
CATCAAAAAAGAACTCGTATCACGCCGTGAATACTTCATTAAAGAACATAAACTTTTAGAAGAACAACGAATTAGCCAAC
GAACCCAATTTGATATTGAAATGATGAATGAATTGGGCTATTGCTCGGGTATTGAAAACTACTCTCGCTATTTGTCAGGC
AGAAATGAAGGCGAGCCACCCCCAACATTATTTGATTATATGCCCTCTGATGCCATTTTAATTATTGATGAATCTCATGT
GACCGTGCCTCAAATTGGTGGAATGTATCGTGGTGACCGTTCGCGCAAAGAAACCTTGGTTGAATATGGTTTCCGTTTAC
CGTCCGCATTGGATAATCGTCCGTTACGCTTTGAGGAATTTGAACGCTTAGCCCCACAAACCATCTATGTTTCCGCAACA
CCAGGGCCCTATGAATTAGAAAAATCAGGCAGTGAAATCATCGATCAAGTGGTTCGCCCGACTGGTTTACTTGATCCGCT
TATTGAAATTCGTCCAGTCTCAATTCAAGTGGATGATTTACTTTCGGAAGCTCGCCAAAGAGCGGATAAAAATGAGCGCG
TTTTAGTGACAACACTCACTAAAAAAATGGCGGAAGATTTAACGGATTATTTAGATGAACATGGGATCCGAGTACGTTAT
CTACATTCTGATATTGATACGGTGGAACGTGTGGAAATTATCCGTGATTTGCGTTTAGGAGAATTCGATGTGTTAGTCGG
CATCAACTTGCTACGTGAGGGATTGGATATTCCAGAAGTGTCTCTTGTGGCGATTTTAGATGCGGACAAAGAAGGATTTT
TACGCTCCGAACGCTCTTTAATCCAAACCATCGGCCGTGCTGCACGAAACTTAAATGGTAAAGCGATTTTATATGCGGAT
AGCATCACAAAATCGATGGAAAAAGCTATTACGGAAACTAATCGTCGTCGTGAAAAACAAACAAAATATAATGAAGAACA
TGGCATTGTGCCACAAGCATTGAATAAGAAAGTTGGGGAATTGTTAGATATTGGGCAAGGTGCAAACCAAAAAGCGAAAG
CCAATAAACAACGTGGAAAAATGGCGGCAGAACCAACCGCACTTTATAATGCACCGAAAAATGCCAAAGAATATCAACAA
CAAATCAAAAAATTGGAACAACAAATGTATAAATTTGCACAAGATTTGGAATTTGAAAAAGCCGCGGCAATTCGCGATCA
ATTACATCAATTGCGTGAACAGTTTGTTTTTGAAAACTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(20-102)

Helicase conserved C-terminal domain (Helicase_C)

(446-549)

UvrB interaction domain (UvrB_inter)

(164-254)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(640-674)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.44

98.969

0.568
  uvrB Streptococcus pneumoniae R6

57.44

98.969

0.568
  uvrB Streptococcus pneumoniae D39

57.44

98.969

0.568