Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   C0J56_RS25505 Genome accession   NZ_CP025542
Coordinates   5656245..5657591 (+) Length   448 a.a.
NCBI ID   WP_134925872.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5651245..5662591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS25480 (C0J56_25465) pgeF 5651459..5652183 (-) 725 Protein_4872 peptidoglycan editing factor PgeF -
  C0J56_RS25485 (C0J56_25470) rluD 5652180..5653142 (-) 963 WP_116833478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C0J56_RS25490 (C0J56_25475) - 5653294..5654310 (+) 1017 WP_134925869.1 outer membrane protein assembly factor BamD -
  C0J56_RS25495 (C0J56_25480) - 5654436..5654669 (+) 234 WP_134925870.1 PP0621 family protein -
  C0J56_RS25500 (C0J56_25485) pilS 5654659..5656248 (+) 1590 WP_134925871.1 ATP-binding protein Regulator
  C0J56_RS25505 (C0J56_25490) pilR 5656245..5657591 (+) 1347 WP_134925872.1 sigma-54 dependent transcriptional regulator Regulator
  C0J56_RS25510 (C0J56_25495) - 5657766..5658131 (-) 366 WP_134925873.1 DUF6124 family protein -
  C0J56_RS25515 (C0J56_25500) - 5658952..5659914 (+) 963 WP_134922977.1 IS110 family transposase -
  C0J56_RS25545 (C0J56_25530) thiO 5660831..5661931 (-) 1101 WP_134925874.1 glycine oxidase ThiO -
  C0J56_RS25550 (C0J56_25535) - 5661988..5662389 (-) 402 WP_134925875.1 type IV pilin protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50152.55 Da        Isoelectric Point: 5.9840

>NTDB_id=262466 C0J56_RS25505 WP_134925872.1 5656245..5657591(+) (pilR) [Pseudomonas fluorescens strain 2P24]
MNTRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQSLLAGDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVAIPATTIERCLLGDSPPMRNVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSNQGFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHSGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAMSTGSPAAKLHPQALQALQNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEQTRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=262466 C0J56_RS25505 WP_134925872.1 5656245..5657591(+) (pilR) [Pseudomonas fluorescens strain 2P24]
TTGAATACTCGCTCACGGCAACGAATCCTGATCGTCGACGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGATACCCGCAGCGCCAAGAACCTGGCCGAGGCCCAAAGCCTGCTGGCGGGGGATACGTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAACACATCCAGCAACGCTACCCGCAACTGCCC
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
GCCGGTCGACCTGGGCCGGCTGCGGGAGCTGGTCACCAGTGCCCTGCGTCTGCCGCCGGTCGCCATACCTGCCACCACCA
TCGAGCGCTGCCTGCTGGGCGACTCTCCACCGATGCGCAATGTGCGCAAACAGATCGAAAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAGTCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCCCGCTCCAA
CCAGGGTTTTGTGCCAGTCAACTGTGGGGCGATTCCCACTGAGCTGATGGAAAGCGAGTTTTTTGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCCGCCCATAGCGGGACCTTGTTCCTCGATGAAGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTACTGCGCGCCATCCAGGAAAAGGCCGTGCGCGCAGTTGGCGGCCAACAGGA
AGAAGTGGTGGACGTGCGAATCCTCTGCGCCACCCACAAGGACCTGGATGCCGAAGTCGCCGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTAAATGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGCCGCGAGGACATCGAACCGCTGGCC
AACCACATGCTCCAGCGTCTGGCCATGAGCACCGGCAGTCCGGCGGCAAAGCTCCATCCACAAGCCCTGCAAGCCCTGCA
AAACTACCGTTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGGGCCTACACCCTTTGCGAACAGCAACAGA
TCGAAGCCGACGACCTGCGCCTGGCCGAAGGCAACAGTGCCAGCGAGGCGGGCAACCCGGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAGCGCAAGCTCATCCTCCAGGCCTTGGAGCAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.107

0.781
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507

Multiple sequence alignment